Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00042 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACATCCAAAATCCACCGCCTCCATTCCCACCTCCCCCTTACTATTACCATCCCCAATCCAACCACCCCCCTCCTCCGCAGCCACCGCAGGGCTACTTCCTCCCTTCCACAACCACTTATGCCCCGCACTGCAACAACTATGCCGCTCCTCCTCCCTTCGCTCCACTGCCACAGCCGCCGCCGCCGTATTACCACAACCAGAGTGTCTATCCCAACTACGCCAATTCCGTCCCCAGTCACCTTCACTACCAACTTTTCTACCACCCTCAGATTTGCGCGTGGCCAGGCGCAACTCGCTCCTCTGCCTCTACTCCTCCGCCCTATGTCGATCACCAGGCTGCGAAGAAGATAAGAAATTATGTGAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGACCATCATCTCATTTCCTTCGTATTCGACGCTGTTTACGATGGCAGCATTACTATCTTCTACTTTGCCAAAGAAGAAGAAAGATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCAGTCAGCATACCCTTTCAGAAAGGAGTTGGTCAAACATTTTCCCAGCCTTCGGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTGTTTCCTCTAGTAATATGTGCTGAAACAAGTTTGAAAACGCCCTCAGAAGATCAAACTCCGGGTGATTCCGTGCTAGATGCATCACCTCACATGCAAATAACTCAGGGTGTCTTAGAGAAAAGTAATGGTGCGGGTCCTTTCCTGATAAATGTAGTAAGGCAGATTTTGTGGATTGATGGTGTTCGGTATGAGTTGAGAGAATTATATGGAATAGCAAGCTCGTCCGCAGCCGATTTTGAGGACAATGATCCAGGGAAGGAGTGTGTCATATGCCTGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAATGTGCAAAAGCTCTGCGAATTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTCATTGAGATCAAAGTAAACAGTACCCATCAATGA 1122 0.4804 MGISWSGRRRNNYIQNPPPPFPPPPYYYHPQSNHPPPPQPPQGYFLPSTTTYAPHCNNYAAPPPFAPLPQPPPPYYHNQSVYPNYANSVPSHLHYQLFYHPQICAWPGATRSSASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITIFYFAKEEERCRFVPLFPDAFQPVSIPFQKGVGQTFSQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTPSEDQTPGDSVLDASPHMQITQGVLEKSNGAGPFLINVVRQILWIDGVRYELRELYGIASSSAADFEDNDPGKECVICLTEPKDTAVLPCRHMCMCSECAKALRIQSNKCPICRQSIEELIEIKVNSTHQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00042 373 SUPERFAMILY RING/U-box 310 363 - -
Vium276g00042 373 SMART ring_2 318 356 IPR001841 -
Vium276g00042 373 MobiDBLite consensus disorder prediction 1 47 - -
Vium276g00042 373 ProSiteProfiles Zinc finger RING-type profile. 318 357 IPR001841 -
Vium276g00042 373 Pfam Zinc finger, C3HC4 type (RING finger) 316 362 - -
Vium276g00042 373 FunFam probable E3 ubiquitin-protein ligase LOG2 302 367 - -
Vium276g00042 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 367 IPR013083 -
Vium276g00042 373 MobiDBLite consensus disorder prediction 15 44 - -
Vium276g00042 373 PANTHER MAHOGUNIN 52 368 IPR045194 GO:0061630
Vium276g00042 373 CDD mRING-HC-C3HC5_MGRN1-like 316 357 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00042 Vium-Chr276 332943 346591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium276g00042 115 337 C3H Transcription Factor Family AT3G09770 46.256 6.64e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00042 - - vra:106775674 590.497