Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium276g00005 ATGATTGTAAAGGAGCATTTTGTTGGTACTGAGCTTGCAATGACTAATGCTATTGTGGAGGAGGATATAGACTTTTCTTGTGATCCGTACATAGGGTTGGAATTTGACACAGCAGATGAAGCACTAAAGTTCTACACTTCATATGCAAATCGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATAGATCAAGAACTGATGGATCAGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGACGTCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCCGGAAAGTGGGTGATTGATCATTTTCATAAGGACCATAATCACAATCTTGAAATCAGTGGGGAAAACTGTACTCCAACATTGGAACAGAAAGGTGATACAGTTGTGAACTCTCTTACTGAGTTTACTAGGAGGCCAAGGAAGAAATTGCTGGAAGAAGCCAATAATGATTCCTCTTGTCCCTTTGGCATTATTGATTTCAAACGTCTGAGAAAGGAAGAACTTGAAGGACAGCCCAAGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCCAAGAATGATGGATTGATTACATCCCGCCGATTTGTTTGCTCCAAGGAGGGGTTCCAGCATCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCGACAGGAAAGTGGACAGTGGACCGCCTCCGAAAGGATCATAACCATGATCTGGACTCTGAAAAAGAGAGCAGGGTAAAAGATATTCATTCTTCTAATATTCTGAATGACGATGCAGATACTGGATTTGTGAATGGTGACTTGTTTAGAATCGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTACAACGTTCTTTTAGAGTATTTTCAAACAAGACAGACAGAAGATACTGGATTCTTTTATGCTGTGGAAGTTGACAATGGTAATTGTATGAGCATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGCCTTAGACACATCATACCGAAAAACTGTCTATTTGGTGCCTTTTGCTACTTTTGTTGGGGTCAATCATCACAAGCAACCTGTGCTTCTTGGATGTGCTTTAGTTGCCGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATTGCTGATCAAGATATTGCAGTCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCTATCATCGGTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTGATGGCTTTACAAAAGACTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAACGTGCTACTCAACAAATATGGATTGAAGGACAATACTTGGCTAAAAGAGATGTATGAGAAGCGTGCATCTTGGGTTCCGTTGTATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCTTGGAGTTCATTCCTCGGTACGAAAGGGGACTTGAGCGACGCCGTGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCAGTGGAAGAACAATGCAGAAGGCTTTACACTCTTGCTGTATTAAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTCGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTGCGAAGGTGTGGAAATGATATGGAGAAACATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAGCATGATGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTACATCGGTGGACAAGAAATGCTGAGGATGGTGTCTTTCCTGACATAGAATCGTGGAGCAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATCGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2283 0.4109 MIVKEHFVGTELAMTNAIVEEDIDFSCDPYIGLEFDTADEALKFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGRQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEISGENCTPTLEQKGDTVVNSLTEFTRRPRKKLLEEANNDSSCPFGIIDFKRLRKEELEGQPKTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPTGKWTVDRLRKDHNHDLDSEKESRVKDIHSSNILNDDADTGFVNGDLFRIDNYPVPRGGRQNHIRSEWYNVLLEYFQTRQTEDTGFFYAVEVDNGNCMSIFWADGRSRYSCSQFGDVLALDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALVADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQRAIAKVFPVTYHRFSLWQIKAKEQENMGLMGDGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDNTWLKEMYEKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLLEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLAVLKVFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEHDGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium276g00005 760 ProSiteProfiles Zinc finger SWIM-type profile. 646 682 IPR007527 GO:0008270
Vium276g00005 760 Pfam MULE transposase domain 371 464 IPR018289 -
Vium276g00005 760 Pfam SWIM zinc finger 653 679 IPR007527 GO:0008270
Vium276g00005 760 SMART 26again6 657 684 IPR006564 GO:0008270
Vium276g00005 760 Pfam FAR1 DNA-binding domain 197 271 IPR004330 -
Vium276g00005 760 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Vium276g00005 760 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 18 124 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium276g00005 Vium-Chr276 22426 25822 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium276g00005 MULE 9.7e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium276g00005 - - vra:111242705 1529.23