Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2767g00013 ATGGGTGCTGGTGACTACTACAAGATACTGAAGGTGAAACGGGATGCCACTGATGAAGAGGTGAAGAGGGCTTATAGGAGTTTGGCCATGAAATGGCACCCTGATAAGAATCTTGAAGACCCTCTTAGGAAGGAAGAGTCTGAAGCCAAGTTCAAGCAGGTTGCTGAGGCCTACAATGTGCTCAGTGACCCCAAGAAGCGCCAGATCTACGATCTTTATGGTCACTATCCCCTTAACTCTCAACGCTTCAGCAAAGAACAAGGGTATGGGATTATGAAGGAGGCAGTGGTGGTTGAAAGCAGCTTGACTTGTACCCTTCTGGAGCTTTACAAGGGTTGCAAAAAGAAATTGAAGGTCTCAAGGACTGTTCCTGATGAATTCGGAGTGCCAAAGTCTGTAGAAGAAATCTTGAAGATAGATATTAAACCTGGTTGGAAGAAGGGTACAAAAATCACTTTTCCTGGGAAAGGCAACCAAGAACCAGGAGGAGCTGCAACTGACCTGATTTTTGTGTTGGATGAGAGACCTCATGATATTTTCAAGAGGGATGGAAATGATCTTGTAGTGATCCAGAAGATATTACTTGTAGAGGCTCTCATAGGAAAAACTTTTAACTTGACTACTTTGGATGGAAGAGATCTCACAATCCAAGTGACTGATATTGTGAGACCAGGGTTTGAGCTAATGGTCCCAAATGAAGGTATGCCAATCTCAAAGGAACCTGGCAAGAAAGGAAACCTCAGAATCAAGTTTGATATTATGTTTCCATCAAGGCTGTCCACACAACAAAAGAGTGATATAAGAAGGATTCTTCTTAGTGATGTTGATTACTAA 834 0.4269 MGAGDYYKILKVKRDATDEEVKRAYRSLAMKWHPDKNLEDPLRKEESEAKFKQVAEAYNVLSDPKKRQIYDLYGHYPLNSQRFSKEQGYGIMKEAVVVESSLTCTLLELYKGCKKKLKVSRTVPDEFGVPKSVEEILKIDIKPGWKKGTKITFPGKGNQEPGGAATDLIFVLDERPHDIFKRDGNDLVVIQKILLVEALIGKTFNLTTLDGRDLTIQVTDIVRPGFELMVPNEGMPISKEPGKKGNLRIKFDIMFPSRLSTQQKSDIRRILLSDVDY 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2767g00013 277 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vium2767g00013 277 Gene3D - 97 175 - -
Vium2767g00013 277 SUPERFAMILY HSP40/DnaJ peptide-binding domain 180 265 IPR008971 GO:0006457|GO:0051082
Vium2767g00013 277 SUPERFAMILY Chaperone J-domain 4 83 IPR036869 -
Vium2767g00013 277 CDD DnaJ 5 63 IPR001623 -
Vium2767g00013 277 SUPERFAMILY HSP40/DnaJ peptide-binding domain 100 178 IPR008971 GO:0006457|GO:0051082
Vium2767g00013 277 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vium2767g00013 277 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vium2767g00013 277 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vium2767g00013 277 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vium2767g00013 277 CDD DnaJ_C 98 259 - -
Vium2767g00013 277 SMART dnaj_3 4 66 IPR001623 -
Vium2767g00013 277 Pfam DnaJ domain 5 71 IPR001623 -
Vium2767g00013 277 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 271 - -
Vium2767g00013 277 Gene3D - 177 257 - -
Vium2767g00013 277 FunFam DNAJ heat shock family protein 176 271 - -
Vium2767g00013 277 Gene3D DnaJ domain 2 96 IPR036869 -
Vium2767g00013 277 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Vium2767g00013 277 FunFam Dnaj homolog subfamily b member 94 175 - -
Vium2767g00013 277 Pfam DnaJ C terminal domain 99 256 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2767g00013 Vium-Chr2767 142074 144622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2767g00013 6 73 C2H2 Transcription Factor Family AT1G74250 37.681 5.22e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2767g00013 K09510 - gmx:100778440 475.322