Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2767g00005 ATGTCTTCCTCCCTCTTCGTCATTTTCCTCTTCCTCTCCATCTTCACACCCTGCAACACTCAAACTTGCTCTTCCAATAACACAAACACAAACCCTAATAATCTCTGCCCTCCCTTCACCTCTCACCCACCTTTCCCTTTCTCCTCCACACCAGGCTGTGGCCACCCATCCTTCCACATAACCTGCTCCAGCCCCCATTCTTTCATCTCCATCAACAACCTCTCCTTCTCCATACTTTCCTACAACTCCAACACCTCCTCCATAACTCTCTTACCTCACCCTCACCCAACGCCTCACCCTAACTGCCCCTCCTTCCCCTCCATTCCTACCCGCTCCATCAACCTCTCCGCCACCCCTTTTCGTGTCTCAGCTGCCACCTGCTCTCGCCTCTCCTTCCTCCGCCCCTGCTCGCCGCCTTCCCTCCCCAACTGCTCCCACTGCCCCTCCCAATGCCACCTCATCAAAACTCCCTCCCACCTCTTCCCTGACTGCAGATCCACCCACCACTCCCCTCAGTACTCAGACTCCCCCTGCCTCACCGACATCCTCGGCTTCCTCCAGCAGTTCCTCAACAAAGGAATCCAACTCGACTGGGACCAAAGCCGTGACCCGTACTTCACTAACTGCACCGTCTGCCGCGCCAACAACGGCACCTGCGGGTTCAACTCCTCCTCCCAGAACAAACCATTCCTCTGCTTCCGCTACCGCTCCCAATCCACACTCACCCCACCATGGATTCGCAAATTCAAACCGAACAAAATGGCCTTTTTCAGCACCGTCATTGCCATCACCTCCCTGCTTCTCCTTATCTCAGTAGCCACCGCCATCCTCCGCTCGGCCAGATCAAAGGCCTCCTCCGCCGCTACGCAGCAAGACCCCACCACACTCTTCCTCCACCACCACCGCTCCGCCAGTCTCCTGCCCCCGGTCTTCACCTACGACGACCTCGCTGCCGCTACCCACAACTTCGACCCCAAGTGGAAAATCGGGGATGGCGGGTTTGGGTCCGTATACCTCGCGCAGCTCCGCGACGGTCGCCTTGCGGCGGTTAAGTACCTCCACCGCAACCACTCCTCCGCCGCGTTCTCTACCAAGTCCTTCTGTAACGAGATCCTCATCCTCTCCTCGATCCACCACGCGAACCTGGTGAAGCTCCACGGTTACTGCAGCGACCCGAGGGGGCTGCTCCTGGTCTACGATTACATCCCCAACGGAACCCTGGCGGAGCATTTGCACCACCGCAAAGGATCTCTGACGTGGCAGGTGAGGCTCGACATCGCGCTACAGACGGCGTTAGTGATGGAGTATCTTCATTTCTCGGTGGTTCCACCGGTCGTACACAGAGACATCACGTCGTCGAATATTTTCGTGGAGAGGGATATGAGGATCAAGGTGGGAGATTTCGGGTTGTCGCGGCTTCTGGTGGTGCAGGACACGACGTCTTCTTCGAACGGGTTTGTTTGGACCGGGCCTCAAGGAACACCGGGCTATCTGGACCCAGATTACCACCGCTCATTCCGGTTGACCGAGAAGAGCGACGTCTACAGTTTCGGAGTTGTGTTATTGGAGCTTATCTCGGGAAAGAAAGCGGTGGACCAGAACAGAGACAAGCGCGAAATGGCGCTTGCGGATTTGGTTGTTTCCAGGATCCAGATGGGGCAGCTCCACCAAGTTCTGGATCCGGTCTTTAAACTCGGCGACAGCGATGGAGTCGCCGCCGTCGCAGAACTTGCATTCCGCTGCGTGGCGGCGGATAAGGACGACCGGCCGGATTCAAGGGAGGTGGTGGAGGAGTTGCGGCGGGTGCGGAGTCGGACGGCGGTGGCAAAGGAGTGA 1836 0.5768 MSSSLFVIFLFLSIFTPCNTQTCSSNNTNTNPNNLCPPFTSHPPFPFSSTPGCGHPSFHITCSSPHSFISINNLSFSILSYNSNTSSITLLPHPHPTPHPNCPSFPSIPTRSINLSATPFRVSAATCSRLSFLRPCSPPSLPNCSHCPSQCHLIKTPSHLFPDCRSTHHSPQYSDSPCLTDILGFLQQFLNKGIQLDWDQSRDPYFTNCTVCRANNGTCGFNSSSQNKPFLCFRYRSQSTLTPPWIRKFKPNKMAFFSTVIAITSLLLLISVATAILRSARSKASSAATQQDPTTLFLHHHRSASLLPPVFTYDDLAAATHNFDPKWKIGDGGFGSVYLAQLRDGRLAAVKYLHRNHSSAAFSTKSFCNEILILSSIHHANLVKLHGYCSDPRGLLLVYDYIPNGTLAEHLHHRKGSLTWQVRLDIALQTALVMEYLHFSVVPPVVHRDITSSNIFVERDMRIKVGDFGLSRLLVVQDTTSSSNGFVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGKKAVDQNRDKREMALADLVVSRIQMGQLHQVLDPVFKLGDSDGVAAVAELAFRCVAADKDDRPDSREVVEELRRVRSRTAVAKE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2767g00005 611 ProSitePatterns Tyrosine protein kinases specific active-site signature. 445 457 IPR008266 GO:0004672|GO:0006468
Vium2767g00005 611 Pfam Wall-associated receptor kinase C-terminal 186 233 IPR032872 -
Vium2767g00005 611 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Vium2767g00005 611 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2767g00005 611 CDD STKc_IRAK 329 599 - -
Vium2767g00005 611 SUPERFAMILY Protein kinase-like (PK-like) 309 603 IPR011009 -
Vium2767g00005 611 Gene3D Phosphorylase Kinase; domain 1 299 401 - -
Vium2767g00005 611 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 606 IPR044652 GO:0004672
Vium2767g00005 611 Gene3D Transferase(Phosphotransferase) domain 1 402 611 - -
Vium2767g00005 611 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 402 611 - -
Vium2767g00005 611 FunFam Putative serine/threonine-protein kinase At1g18390 family 299 401 - -
Vium2767g00005 611 Pfam Protein tyrosine and serine/threonine kinase 328 599 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2767g00005 Vium-Chr2767 60276 62734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2767g00005 36 611 Receptor kinase-like Gene Family AT1G69910 61.937 0.0 716
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium2767g00005 PK_Tyr_Ser-Thr 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2767g00005 - - gmx:100816739 879.782