Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2766g00002 ATGGATTCTGCTCCCAATCTTTCTCTTCATTCTCAAAACCACACCTCCACTCACTGCCGTGTCAAGGGCTTTCTCGTCTACACTCGCCGCAAACGTTTTCTTCATTCCGCCAATGATGCAGCCAAAAGACTCAAAACTGAAGAAATTAAAACAGAAGAATCTCATGATGAGGACTCCGTGTTCAAGCTCCCCAGAGTGGACTCTCGAGAGGACCCCAATTCTGCCGAGGAATTAATCAAGACTGAATTGAATATTCCACAGAAGAAGATTGTGGTGGTCAGTAAGAAACCCGTCACCGTCAAGGAGCTCTTTGAAACTGGTTTGCTAGAAGGCGTTCCGGTCGTTTACGTCGGTTGCAAGAAGGATTCAACTTCGGAATTGCGGGGTGTAATTACTGATGGTGGGATCTTGTGCTCGTGCCGTCTTTGCAATGGATGTAGGGTTATTCCACCTTCCCAATTTGAGATTCATGCATGCAACATATATAAGAGGGCAGCACAATATATTTGCCTTGAAAATGGGAAGAGCTTGCTTGAACTATTGAGAGCATGCAGGGCAGCCCCGCTACATACTTTGGAGACGACCATTCAAAATTTTGTTAGTTCTCCACCTGAGGAAAAGTATTTTACTTGCAAAAGTTGCAGAGGATGTTTTCCTGCTTCCAATGTGGAAAGAGTGGGCCTTTTGTGTCTATCATGTGTGGAATCAAGAAAATCTGAAAGCAGTTCTATTCATGCTGTTGGCAAAAGAGTCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCTTGTTGTAGTTCTGAATTATGTATTTCTCCTCAAACTAAGAGACACTGGAAGACAAGAACAAAATCATCAAAACTATCATTAAAGTTGAAGACTGCTCCGATTACTTCAAAGTGTTTATCTCCACAACATAAAAATCAGTGGAGGATCTCTAAAAGGTATCAGCGAATACATAAATTGATTTTTGAAGAGGATGGATTGCCTAATGGGGCTGAAGTAGCTTATTATGCACGTGGACAGAAACTGCTTGAGGGTATCAAAACACGCTATGGAATTGTCTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAAGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACATCGAATGGGGTTTCACTCCATGAGTTAGCTATATTTCTCTCGAAAGATCACAAATGCACTACAAAGCAGAATGATTATGCATGTGTAGTTTGTTGGGATGGTGGAAACCTGTTGCTCTGTGATGGATGTCCAAGGGCCTTTCATAAAGAATGTGCATCTGTATCAAGCATTCCCCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACATTTCTCAGAGAAAGGCCTGTGTTATACAATGCTGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCCATTGAGGAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATTGGTGGATGTGTTTTATGCAGGAGTTCTGATTTCAGCAGATCAGGATTTGGTCCTCGTACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGTTGCTTGCGGGATCGTAAGATGGCATTTCTGAAGGAGTTACCAGAAGGGGATTGGCTTTGTTGCAACGATTGCACCAGAATACATACTACTTTGGAGAATCTCCTGGTTACGGGGGCTGAGAGACTCCCTGAATCTCTTTTGGATGTTATAAAGAAGAAGCATGTAGAAAGAGGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAAACTTCTTAATGGAAAAGTTGCGTCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGGCCATGTTTAATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGTGACCTCATTCCTGCCATGGTTTATGGAAGGAATTTGCAGACTCAAGATTTTGGAGGAATGTATTGTGCATTATTGATCGTCAATTCATCGGTGGTATCTGCGGGCATGCTTCGAATTTTTGGTGAGGACATTGCCGAACTCCCCATAGTTGCAACAAGATATAAGAACCGTGGGAAGGGCTACTTCCAAACACTTTTCTCGTGCATTGAGAGGCTGCTGGCTTTCTTGAAAGTGAAAAATCTTGTGCTACCGGCTGCTGAAGAAGCAGAATCTATATGGACAGAAAAATTCGGATTTAGCAAGATGAAACCCGATGAGCTTACCAACTATAGAATGAACTGCCATCAGATCATGGCATTTAAGGGGACTATAATGCTTCATAAAACGGTACCTCGATGTCGTGTCATCAATACTCAATCATGA 2343 0.4306 MDSAPNLSLHSQNHTSTHCRVKGFLVYTRRKRFLHSANDAAKRLKTEEIKTEESHDEDSVFKLPRVDSREDPNSAEELIKTELNIPQKKIVVVSKKPVTVKELFETGLLEGVPVVYVGCKKDSTSELRGVITDGGILCSCRLCNGCRVIPPSQFEIHACNIYKRAAQYICLENGKSLLELLRACRAAPLHTLETTIQNFVSSPPEEKYFTCKSCRGCFPASNVERVGLLCLSCVESRKSESSSIHAVGKRVRSPRPVLFSRSCSCCSSELCISPQTKRHWKTRTKSSKLSLKLKTAPITSKCLSPQHKNQWRISKRYQRIHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRYGIVCRCCNTEISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYACVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLYNADAVAAGRVEGVDPIEEIAKRCIRIVKDIGAEIGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDRKMAFLKELPEGDWLCCNDCTRIHTTLENLLVTGAERLPESLLDVIKKKHVERGLEPLNEIDVRWKLLNGKVASPETRPLLLEAVAMFNECFDPIVDPAAGRDLIPAMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMLRIFGEDIAELPIVATRYKNRGKGYFQTLFSCIERLLAFLKVKNLVLPAAEEAESIWTEKFGFSKMKPDELTNYRMNCHQIMAFKGTIMLHKTVPRCRVINTQS 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2766g00002 780 Pfam Tify domain binding domain 350 398 IPR032308 -
Vium2766g00002 780 Pfam Tify domain binding domain 129 184 IPR032308 -
Vium2766g00002 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 476 IPR013083 -
Vium2766g00002 780 ProSiteProfiles Zinc finger PHD-type profile. 412 457 IPR019787 -
Vium2766g00002 780 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 499 561 - -
Vium2766g00002 780 ProSitePatterns Zinc finger PHD-type signature. 415 454 IPR019786 -
Vium2766g00002 780 PANTHER AUTOIMMUNE REGULATOR 48 769 - -
Vium2766g00002 780 SMART PHD_3 414 455 IPR001965 -
Vium2766g00002 780 SMART PHD_3 502 559 IPR001965 -
Vium2766g00002 780 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 401 478 - -
Vium2766g00002 780 SUPERFAMILY FYVE/PHD zinc finger 497 557 IPR011011 -
Vium2766g00002 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 561 IPR013083 -
Vium2766g00002 780 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 658 744 IPR016181 -
Vium2766g00002 780 SUPERFAMILY FYVE/PHD zinc finger 400 457 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2766g00002 Vium-Chr2766 43778 54392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2766g00002 89 777 PHD Transcription Factor Family AT2G36720 50.000 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2766g00002 - - gmx:100798276 1355.5