Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2763g00011 ATGGGCAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGATGTGGCAAGAGTTGCCGCCTTAGGTGGCTGAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCCGAGGAAGAAGACAACATTATTTGCAGCCTTTACATCAGTATCGGAAGCAGGTGGTCGGTGATTGCAGCACAGTTGCCGGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCATCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAAGCAAGAAATTAGTGATGCTAATAGAAGGAGTAGCGATGGTGATTCTTCTTCCTTATCCATGGTTCAGGAAAATAGTAGCACTAGTCAACAACATCACCAACAACAACATCAACAATTATGTTGGCCACAGAACATCAACATGCCAGTGCTGCCACTACCCATAATACCCTTGCCATACACAACAAGCCAAGGTCCAGGTTTCAACGACCAAGATTCCATCAAGAAACTCCTGATCAAACTAGGAGGAAGATTTTCAGGTGATTATTACCAGCCTACCCTTGATGGGTTGAACCTTCAATGCTCCTCACAAGGGCAACAAGTTTACCAAGAACAAGTCCATGTTGGTTCCTCTTCTTCTTCAGCCTGCATTGTTGCCAACAACGAGGTACACTTTGGACAAAATGGTCAATACTCTGGAGTTGATGACATGATGCAAGGACAAGATGGTAATTTCACGCCATCATTTGAGGAAATGGTGCCTTCTTCTAATTATTCAGATGGGTTAGAGTTCTTGTACAATGAAGGCATGATCCTCCACAAGATAACAGATTCTACTATCACTACTACTTGTGACCAAAACACCACTACCACCACCACAAATTGGGATGAAACCACCACTTCCATTTATCACCATGATTCACTTGCTTCCCATTTTGAAGGTCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCAGGGGCACAATAA 1110 0.4378 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQEISDANRRSSDGDSSSLSMVQENSSTSQQHHQQQHQQLCWPQNINMPVLPLPIIPLPYTTSQGPGFNDQDSIKKLLIKLGGRFSGDYYQPTLDGLNLQCSSQGQQVYQEQVHVGSSSSSACIVANNEVHFGQNGQYSGVDDMMQGQDGNFTPSFEEMVPSSNYSDGLEFLYNEGMILHKITDSTITTTCDQNTTTTTTNWDETTTSIYHHDSLASHFEGQECALQEFSYPGAQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2763g00011 369 MobiDBLite consensus disorder prediction 119 173 - -
Vium2763g00011 369 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium2763g00011 369 CDD SANT 71 113 IPR001005 -
Vium2763g00011 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vium2763g00011 369 SMART sant 13 64 IPR001005 -
Vium2763g00011 369 SMART sant 67 115 IPR001005 -
Vium2763g00011 369 MobiDBLite consensus disorder prediction 131 173 - -
Vium2763g00011 369 PANTHER OS09G0431300 PROTEIN 1 297 - -
Vium2763g00011 369 CDD SANT 16 62 IPR001005 -
Vium2763g00011 369 Gene3D - 7 68 - -
Vium2763g00011 369 FunFam Transcription factor MYB36 70 142 - -
Vium2763g00011 369 Gene3D - 70 174 - -
Vium2763g00011 369 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium2763g00011 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vium2763g00011 369 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium2763g00011 369 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium2763g00011 369 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium2763g00011 369 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2763g00011 Vium-Chr2763 41073 43053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2763g00011 1 214 MYB Transcription Factor Family AT3G49690 58.986 7.52e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2763g00011 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2763g00011 K09422 - gmx:100800290 547.354