Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2759g00004 ATGAAGAGAGACAGAGAAGAGGGTGAGTTAGACAACATGGCTAACTGTCTGATGCTATTGACCAAAGTTGGTGAGAGTGAAGCCAACGCAACATCTAAGGGTAGAGATAAAAGGGATGGTGAAATTGGTGATTTCAAGTGCAAAACTTGCAATAGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAACCAAAGCTCATGATCACTGATCTTTCGTGCCGTCACCAGTTACCTTGTACTCCAACCACCAAACAACAACCTCGGATGCACCCGTGTCCCATTTGTGGGCTTCAGTTTGCCATTGGACAAGCATTGGGAGGGCACATGAGGAAACATAGAACTGCCATTAATGATGGTCTGTTGAATAGGAGAGATTCGGATTCTTTGTCCATTCTGAAGAAATCTAAAAATGGTGGAAGGTTGAATTTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAATCTAAGAACACCCGTTCTCAATTGTTTCATTTGA 531 0.4275 MKRDREEGELDNMANCLMLLTKVGESEANATSKGRDKRDGEIGDFKCKTCNRRFSSFQALGGHRASHKKPKLMITDLSCRHQLPCTPTTKQQPRMHPCPICGLQFAIGQALGGHMRKHRTAINDGLLNRRDSDSLSILKKSKNGGRLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2759g00004 176 SMART c2h2final6 96 118 IPR013087 -
Vium2759g00004 176 SMART c2h2final6 45 67 IPR013087 -
Vium2759g00004 176 Gene3D Classic Zinc Finger 21 122 - -
Vium2759g00004 176 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Vium2759g00004 176 SUPERFAMILY beta-beta-alpha zinc fingers 45 118 IPR036236 -
Vium2759g00004 176 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vium2759g00004 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Vium2759g00004 176 Pfam C2H2-type zinc finger 96 120 - -
Vium2759g00004 176 Pfam C2H2-type zinc finger 45 70 - -
Vium2759g00004 176 PANTHER ZINC FINGER PROTEIN ZAT5 7 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2759g00004 Vium-Chr2759 28950 29594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2759g00004 1 167 C2H2 Transcription Factor Family AT2G28710 44.706 1.29e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2759g00004 zf-C2H2_6 3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2759g00004 - - vra:106758971 306.605