Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2758g00001 ATGTTTGGATTGTACCATGTTTCCTCTCAGCTCTCCCCTTCTTTCGATTCTTCATCTCCACCGTCCGTCGAATTCTCCGACGAGGAGGTTCTGCTGGCAGTCAGGCATCCCAAGAAGAGGGCGGGCCGGAAGAAGTTCCGGGAGACGCGCCACCCAGTGTACCGCGGAGTGAGGAGTAGGAACTCCGACAAATGGGTGTGTGAGGTGAGGGAGCCAAACAAAAAGAGCAGGATTTGGCTGGGGACTTTCCCCACCCCGGAGATGGCGGCGCGGGCTCACGATGTGGCGGCGATGGCCCTCAGGGGCCGGTATGCCTGTCTCAACTTCGCCGACTCGAGGTGGCGGTTACCAGCCCCTGCTAGTGCCAGCGCCAAGGATATACAAAAGGCAGCAGCAGAAGCTGCGGAAGCTTTCAGACCAGACCAAAGTTCACAGAACAGTAACACTAGACAAGAGTGCTTGGAGGAGGTGACAAAAACAACGGAACAAGGCGTGTTTTACATGGAGGAAGATCACGAAGAGCAAGTGTTGGATATACCTGAGCAGCTGAGGAACATGGTGCTCATGTCCCCATCACATTGCTTAGGGTATGAGTACGAAGATGCTGACTTGGATGCTCATCAAGATACTGAGGTGTCACTGTGGAGTTTCTCAATCTGA 660 0.5424 MFGLYHVSSQLSPSFDSSSPPSVEFSDEEVLLAVRHPKKRAGRKKFRETRHPVYRGVRSRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPAPASASAKDIQKAAAEAAEAFRPDQSSQNSNTRQECLEEVTKTTEQGVFYMEEDHEEQVLDIPEQLRNMVLMSPSHCLGYEYEDADLDAHQDTEVSLWSFSI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2758g00001 219 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Vium2758g00001 219 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Vium2758g00001 219 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vium2758g00001 219 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Vium2758g00001 219 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Vium2758g00001 219 PIRSF PTI6 23 171 IPR017392 GO:0003700
Vium2758g00001 219 PIRSF PTI6 130 219 IPR017392 GO:0003700
Vium2758g00001 219 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Vium2758g00001 219 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vium2758g00001 219 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vium2758g00001 219 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 217 IPR045277 GO:0003700
Vium2758g00001 219 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2758g00001 Vium-Chr2758 10785 11760 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2758g00001 32 217 AP2-EREBP Transcription Factor Family AT5G51990 56.566 4.44e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2758g00001 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2758g00001 - - gmx:547622 321.242