Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2757g00001 ATGCCATCGTCCAACTCCGGCGAGAGCCGCCGACCAGTCAAGCCCCAGACCTCCGCCGGAGCACCGCCACCTCCAGAGCAAGAAAACCTCCCCTGCCCCCGTTGTGAGTCAACCAACACTAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCACGCCACTTCTGTAAGTCCTGCCGCCGGTATTGGACCCATGGTGGCACCCTCCGTGATATCCCCGTCGGCGGTGGCAGTCGCAAGAATGCCAAGCGTTCACGCACCCACCACACTGCCACGTCATCCTCCTCCTCCACCATGACGTCAGCTCAGGAGCACGCTCTACCTGCATTGGCCCCTGTTCCAACGACCCAAGGAGGCTCCATGCACTTCGTGGACGGTGACGTTAATAAACAGAACAACGTGAATGTCTGCGGGAGCTTCACCTCTTTGCTGAACAACACCCAGGGCAATGGGTTTCTCGCCCTCGGCGGGTTTGGACTTGGGCTCGGACACGGGTTCGATGATATGGGCTTTGGGATTGGCAGGACGGGCTGGGGCTTCCCTGGAATGGTGGATGGTGCCAACATGGGCAGCGGCGTTCCGTCTTCTGGATTGAGCCCATGGCAGTTAGAGAGTGGCGAAGGTGGGTTTGTTAGTGGAGACTGTTTTTCGTGGCCTGGGCTTGCGATTTCCACACCTGGGAATGGTCTCAAATGA 699 0.5823 MPSSNSGESRRPVKPQTSAGAPPPPEQENLPCPRCESTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHTATSSSSSTMTSAQEHALPALAPVPTTQGGSMHFVDGDVNKQNNVNVCGSFTSLLNNTQGNGFLALGGFGLGLGHGFDDMGFGIGRTGWGFPGMVDGANMGSGVPSSGLSPWQLESGEGGFVSGDCFSWPGLAISTPGNGLK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2757g00001 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 151 IPR045174 GO:0003700|GO:0006355
Vium2757g00001 232 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Vium2757g00001 232 MobiDBLite consensus disorder prediction 89 105 - -
Vium2757g00001 232 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Vium2757g00001 232 MobiDBLite consensus disorder prediction 1 32 - -
Vium2757g00001 232 MobiDBLite consensus disorder prediction 71 105 - -
Vium2757g00001 232 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2757g00001 Vium-Chr2757 10841 12096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2757g00001 1 232 C2C2-Dof Transcription Factor Family AT3G50410 49.804 4.63e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2757g00001 zf-Dof 9.5e-33 No_clan