Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2755g00001 ATGAACAATAGAGATAGAGAGAGGTACCCACCTGGGATGGGGTTAGGAAGAGGGTTGAACTCGAACCCTGGGTTTCAACCGAGGCCACATCAGCAACATCAATATGTGCAGAGGCACATGGTGCAGCACCATCATCCGCAGCAGTATCAACAGAACCACCACCACCATCAGCAGCAGCAACAACAGCATCATCAACACCATCAACATCAGCAGCAACAACAACAACAGCAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACACCAACGTTGTCGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAAGTTTACAAGATTGGAAGGCGAGACTAAATATCCCTGCACCTGATACACGCTACAAGACAGAGGATGTGACAGCAACTAAAGGCAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAGAGGCCATCTCCTATCCAAGAAGAAAGCATTCCCATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTAATATTGGTCCCAACTCGAGAGCTGGCTTTGCAAACATCCCAAGTGTGTAAAGAACTTGGAAAACATTTGAAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCGGTTCATCTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTATGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAACAACTGATTCAATTTCTTCCTGGAACCCGTCAAATTCTGATGTTTTCTGCTACATATCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTACGTAAGCCATACGTTATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAATATTATGCATTTGTTGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATTTTCTGCAATTCTGTGAATCGGGTTGAACTTCTTGCCAAGAAAATCACTGAACTTGGGTATTCGTGTTTCTATATCCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTCTTCACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACCTACCTACACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCAGTGAATTTGATCACCTATGAGGATCGCTTCAATTTATATAGAATTGAACAAGAACTTGTCACTGAAATAAAACAAATTCCGCCACACATTGATCAAGCAATATATTGCCGGTGA 1536 0.4154 MNNRDRERYPPGMGLGRGLNSNPGFQPRPHQQHQYVQRHMVQHHHPQQYQQNHHHHQQQQQQHHQHHQHQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSEAVDSSLQDWKARLNIPAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPGTRQILMFSATYPVTVKDFKDRYLRKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELVTEIKQIPPHIDQAIYCR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2755g00001 511 CDD DEADc_DDX6 139 339 - -
Vium2755g00001 511 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 338 IPR014001 -
Vium2755g00001 511 MobiDBLite consensus disorder prediction 1 79 - -
Vium2755g00001 511 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 284 292 IPR000629 -
Vium2755g00001 511 Pfam DEAD/DEAH box helicase 162 326 IPR011545 GO:0003676|GO:0005524
Vium2755g00001 511 Gene3D - 342 511 IPR027417 -
Vium2755g00001 511 MobiDBLite consensus disorder prediction 64 79 - -
Vium2755g00001 511 MobiDBLite consensus disorder prediction 24 56 - -
Vium2755g00001 511 FunFam ATP-dependent RNA helicase DDX6 118 341 - -
Vium2755g00001 511 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 508 IPR001650 -
Vium2755g00001 511 CDD SF2_C_DEAD 349 478 - -
Vium2755g00001 511 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Vium2755g00001 511 Pfam Helicase conserved C-terminal domain 363 469 IPR001650 -
Vium2755g00001 511 Gene3D - 95 341 IPR027417 -
Vium2755g00001 511 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 491 IPR027417 -
Vium2755g00001 511 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 71 510 - -
Vium2755g00001 511 SMART ultradead3 156 352 IPR014001 -
Vium2755g00001 511 FunFam ATP-dependent RNA helicase DDX6 342 511 - -
Vium2755g00001 511 SMART helicmild6 388 469 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2755g00001 Vium-Chr2755 5288 11675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2755g00001 137 508 Eukaryotic Initiation Factors Gene Family AT3G19760 37.968 2.06e-92 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2755g00001 K12614 - gmx:100788032 870.537