Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2754g00003 ATGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGTGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGATGCTCTTAATCAGAACATTAGACGCTGCAAATATGTTAAACCAACGTCGGTCCAGCGGCATGCCATACCCATATCCCTTGGCGGGCGGGATTTGATGGCTTGTGCTCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAGGTCAAGGGCAGGCCCCCCTACGGCCCCCTCGCGGTGCCCGTACAGTCTATCCATTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATACCAGAGTGGGCGCGTCGTTCTGAAGAAAAAGCGTTTGGGTGGGGTTGGAGAGTGA 447 0.5123 MGINFDAYEDIPVETSGENVPPPVNTFAEIDLGDALNQNIRRCKYVKPTSVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQAPLRPPRGARTVYPFALVLSPTRELSVQILEEARKFSYQSGRVVLKKKRLGGVGE 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2754g00003 148 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Vium2754g00003 148 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 148 IPR014001 -
Vium2754g00003 148 PANTHER RNA HELICASE 21 131 - -
Vium2754g00003 148 Pfam DEAD/DEAH box helicase 49 136 IPR011545 GO:0003676|GO:0005524
Vium2754g00003 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 136 IPR027417 -
Vium2754g00003 148 Gene3D - 1 143 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2754g00003 Vium-Chr2754 83039 84091 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2754g00003 23 121 Eukaryotic Initiation Factors Gene Family AT3G19760 29.293 3.34e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2754g00003 K11594 - vum:124831718 299.286