Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2752g00005 ATGGCGACTTTGATCCTCAGAAGATCCTCCTCTGTAATCTCGCGCCGCTTCTTCGCCACTCTCGCCACCGTCGAATCGCTTCCGCGCCACAGCGGGCTCGCAGCTGTCCGGCACGGTGGCTCCAACGACGGAGTTGGAATCAGATCCTTGCATGCGATATCCGGACCGTTGAACTTCCGCTCGTCGCCGGTTTCTTGCACGGCGCAGCTCGCCGTGGAACGCGACTACTCCAACGAAGAGGTAGGTTCCGGCACGAACTGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCTCGACGGAGATCGTGGATGCCTTGGCCAAGAAAGGGATCGCAAAGCTGTTTCCTATCCAGAGAGCTGTGCTGGAACCTGCAATGCAGGGACGTGATATGATTGGTCGAGCTAGGACAGGAACTGGGAAAACTCTTGCATTTGGGATACCCATCTTAGACAGGATTATTCAGCTAAATGCTAAGCATGGGCGAGGAAAAGATCCTTTGGCTATGGTTTTGGCTCCTACTAGAGAACTTGCACGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACCTGGACACGATCTGTCTTTATGGGGGTATGCCCATCCAACAACAAATGAGGCAGCTTAATTATGGTGTAGATATTGTAGTAGGCACACCTGGTCGAATTATTGATCTTCTCAATAGGAGGGCACTGAATTTAAAGGATGTGAAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGGTTTCAAGAAGCTGTGGAGAACATCTTGGAGAATTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAGTATTACCCGCAATTACCTAAACAACCCCCTTACCATTGATCTCGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGCGTCTGATGTGCGCACTAAAGCAGGGATTCTTGCACCCCTGATAACAGAACATGCCAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATAGATTATCATATGTAATGGCTAAAAGCCTTAAATGTGAGGCTTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGAACTCTTGCTGGTTTCAGAAACAACCATTTCAATGTTTTAGTGGCAACCGATGTTGCATCACGGGGCCTTGACGTTCCAAATGTAGATCTTGTGATACATTATGATCTTCCCAGTTCATCAGAGATATTTGTTCACAGATCTGGACGAACAGGCCGTGCTGGGAAGAAAGGAGCTGCCATTCTTATTTACTCAGAAGATCAATTCAGGACTGTAAGGACTATTGAGCGTGATGTTGGATGCAAATTTACTGAGCTAGCAAAGATTAATGTTCAGAGTGGATCAGCAGACATGTTTGGTGGATGGAGTGGTGGTCGATTTGGTTCTTCAGGAGGTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAGTCCTGGATTTGGCCGATCTAGCTATGGAAATTCCAGTTCTGGCAGTTATAGTAACTCCGGGTTTGGCCGATCTAGCCATGGAAATTCCAGTGAAACAGGAAGGTTTGGAGGACCAAAGTCTAGCCATTTTGGCAGCCCTGGTTCAAGTCTATCAGGAGGGGGTTTGGGTGGTAGCTTTGATCGATCTGGTGGATTTGGTAGCTCAGATCGATCTGGTGGATTTGGTAGCTCAAATCGATCTGGTGGTTTTGGATGGGCTCAATCTGGTGGTTTTGGTGATAGGAAGTGA 1791 0.4729 MATLILRRSSSVISRRFFATLATVESLPRHSGLAAVRHGGSNDGVGIRSLHAISGPLNFRSSPVSCTAQLAVERDYSNEEVGSGTNCDEGLEIAKLGISTEIVDALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRIIQLNAKHGRGKDPLAMVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPIQQQMRQLNYGVDIVVGTPGRIIDLLNRRALNLKDVKFVVLDEADQMLQVGFQEAVENILENLSPNRQTLMFSATMPSWIKSITRNYLNNPLTIDLVGDSDQKLADGISLYSIASDVRTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLKCEALHGDISQTQRERTLAGFRNNHFNVLVATDVASRGLDVPNVDLVIHYDLPSSSEIFVHRSGRTGRAGKKGAAILIYSEDQFRTVRTIERDVGCKFTELAKINVQSGSADMFGGWSGGRFGSSGGMRDRQSGGTGFGRSPGFGRSSYGNSSSGSYSNSGFGRSSHGNSSETGRFGGPKSSHFGSPGSSLSGGGLGGSFDRSGGFGSSDRSGGFGSSNRSGGFGWAQSGGFGDRK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2752g00005 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Vium2752g00005 596 SMART helicmild6 350 430 IPR001650 -
Vium2752g00005 596 Pfam Helicase conserved C-terminal domain 325 430 IPR001650 -
Vium2752g00005 596 MobiDBLite consensus disorder prediction 570 585 - -
Vium2752g00005 596 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 463 - -
Vium2752g00005 596 MobiDBLite consensus disorder prediction 482 596 - -
Vium2752g00005 596 FunFam ATP-dependent RNA helicase RhlE 80 299 - -
Vium2752g00005 596 SMART ultradead3 110 313 IPR014001 -
Vium2752g00005 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 470 IPR001650 -
Vium2752g00005 596 Gene3D - 314 472 IPR027417 -
Vium2752g00005 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 451 IPR027417 -
Vium2752g00005 596 CDD SF2_C_DEAD 322 439 - -
Vium2752g00005 596 Pfam DEAD/DEAH box helicase 115 283 IPR011545 GO:0003676|GO:0005524
Vium2752g00005 596 Gene3D - 92 300 IPR027417 -
Vium2752g00005 596 CDD DEADc 102 297 - -
Vium2752g00005 596 MobiDBLite consensus disorder prediction 505 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2752g00005 Vium-Chr2752 29364 41893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2752g00005 96 461 Eukaryotic Initiation Factors Gene Family AT3G19760 32.973 2.20e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2752g00005 - - gmx:100802553 789.645