Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium274g00020 ATGACTCGTCTAACGCCGCTGCCGCCGCCACCACCACAACCCAACACTATTCTCGACGACAGGTTTCCTTTCTTCAACCAATCCATGGACCTTGTCCAACTCCCAAACCCGCCCACAACCCGAACCCGATCCCGCACCCTCGCCGATCTCCTAAATCGCGTCCAAGACGCCCAAAACGACACACCACCTGCACCACCCCACCATGTTCTTGACCTCTCCTCCTCCTCCTCCTCCACCCACCCCTTTGTCCTCTCCTTTTTCAATTTGACCTACAGTGTCAAGCTTCACCGCAAGTTCACTTTTTTTCCCACCACCACCGTTTTCCCACCCGACCACGAAACTAAACCCAACGGCACCAAGACTCTCCTCAACGACATCTCCGGCGAGGCCAGGGACGGCGAGATCATGGCCGTCCTCGGTGCCAGTGGCTCTGGCAAGTCCACTCTCATCGACGCCCTCGCCAACCGCATATCAAAGGAAAGTCTGAAAGGTACAGTCACCCTAAATGGCGAGGTTTTAGACTCGAGTCTTTTAAAGGTGATTTCCGCTTATGTCATGCAAGACGACCTCCTCTTTCCCATGCTCACCGTCGAAGAGACGCTCATGTTCGCAGCGGAGTTCAGACTCCCTCGCTCCCTCTCGAAATCCAAGAAGAAAGCACGCGTCCAGGCCTTGATAGACCAGCTCGGCCTCCGCTCCGCCGCCTCCACCGTCATTGGCGACGAGGGCCACCGCGGCGTGTCCGGGGGAGAACGCCGTCGCGTCTCCATCGGAATCGACATCATCCATGATCCCATCGTGCTCTTCCTCGACGAACCAACTTCGGGCCTCGACTCCACAAGTGCCTTCATGGTGGTGAAAGTGCTGCAGCGAATCGCTCAGAGTGGAAGCATCGTCATCATGTCCATTCACCAACCTAGCTACCGAATCTTAGGCTTATTGGACCACTTGATCTTCCTCTCCCACGGTAACACTGTCTACAGCGGCTCTCCGGCGAACCTCCCAGCCTTCTTCTCCGAGTTCGGCCACCCCATACCGGAGAACGAAAACCGCACAGAATTCGCTCTCGACCTAATTCGAGAACTGGAAGAACAACCCAGTGGGACAAAGAGTTTAGTGGACTTCAACAAATCGTGGCAGCTGAAAGAAAAAAACTCGGTCCAGTCCCAGAATGATCACAAGCCCAAACCATCTCTGAAGGACGCCATCAGCGCTAGCATTTCCAGAGGGAAACTGGTGTCCGGCGCTAACGGTAACGGCAAGAACTCAACGGCGGCAGTTTCCGTTCCCGCCTTCGCGAATCCGTTTTGGATGGAAATGGCGGTGATAGGAAAAAGGTCTCTGACGAACTCACGAAGGATGCCAGAGTTATTCGGGATTCGTTTAGGTGCAGTTCTTGTGACGGGGGTAATCTTGGCAACAATCTTCTGGCACCTGGATGATTCACCAAAAGGGGTTCAGGAGCGCGTGGGGTTCTTCGCCTTCGCCATGTCCACCACGTTTTACACCTGCGCCGAAGCCATCCCAGTGTTCCTCCAAGAGCGTTACATCTTCATGAGGGAGACAGCGTACAACGCCTACCGTCGCTCTTCCTACGTCCTCTCACACGCAATCATCTCACTCCCTTCCCTGCTCTTTCTCTCTTTCGCCTTTGCAGCCACCACCTTTTGGGCCGTGGGCCTGGCGGGCGGCTCTTCGGGCTTTCTCTTTTACTTTCTGGTGATCGTGGCCTCCTTCTGGGCTGGAAGCTCCTTCGTGACGTTCCTGTCGGGAGTGGTGTCGCATGTGATGATAGGGTTCACGGTGGTGGTTGCGATCTTGGCCTACTTTCTTCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGAATCCCTCCCTACTGGATATGGTTCCACTACCTGTCGCTGGTGAAGTACCCGTACGAGGGAGTGTTGCAGAACGAGTTCGACGTTAACTCTCCGAGGTGCTTCGTGAGGGGGATTCAGATGTTCGACAACACGCCCTTGGGGATGGTGCCGGAGACGCTGAAGGTGGAGCTGCTGAAGAGCATGAGCGAGACGCTGGGCATGAACATCACGAGGTCCACCTGCGTGATCACCGGAGCGGATGTGCTGAAGCAGCAAGGGATAACGCAGCTGAGCAAATGGAGCTGCTTGTGGATCACGGTTGCATGGGGATTCTTCTTTCGATTCCTCTTTTATTTGACGCTTCTCTTTGGGAGCAGGAACAAGAGGAGGTAG 2238 0.5514 MTRLTPLPPPPPQPNTILDDRFPFFNQSMDLVQLPNPPTTRTRSRTLADLLNRVQDAQNDTPPAPPHHVLDLSSSSSSTHPFVLSFFNLTYSVKLHRKFTFFPTTTVFPPDHETKPNGTKTLLNDISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTVTLNGEVLDSSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKARVQALIDQLGLRSAASTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDHLIFLSHGNTVYSGSPANLPAFFSEFGHPIPENENRTEFALDLIRELEEQPSGTKSLVDFNKSWQLKEKNSVQSQNDHKPKPSLKDAISASISRGKLVSGANGNGKNSTAAVSVPAFANPFWMEMAVIGKRSLTNSRRMPELFGIRLGAVLVTGVILATIFWHLDDSPKGVQERVGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLSHAIISLPSLLFLSFAFAATTFWAVGLAGGSSGFLFYFLVIVASFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPPYWIWFHYLSLVKYPYEGVLQNEFDVNSPRCFVRGIQMFDNTPLGMVPETLKVELLKSMSETLGMNITRSTCVITGADVLKQQGITQLSKWSCLWITVAWGFFFRFLFYLTLLFGSRNKRR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium274g00020 745 ProSitePatterns ABC transporters family signature. 247 261 IPR017871 GO:0005524|GO:0016887
Vium274g00020 745 Pfam ABC-2 type transporter 442 648 IPR013525 GO:0016020|GO:0140359
Vium274g00020 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 339 IPR027417 -
Vium274g00020 745 FunFam ABC transporter G family member 6 112 338 - -
Vium274g00020 745 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 73 733 - -
Vium274g00020 745 SMART AAA_5 132 347 IPR003593 GO:0016887
Vium274g00020 745 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 102 347 IPR003439 GO:0005524
Vium274g00020 745 Pfam ABC-2 type transporter 304 396 IPR043926 GO:0140359
Vium274g00020 745 Gene3D - 112 338 IPR027417 -
Vium274g00020 745 Pfam ABC transporter 123 275 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium274g00020 Vium-Chr274 72182 74535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium274g00020 122 373 Calmodulin-binding Proteins AT2G36910 25.385 7.67e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium274g00020 K05681 - gmx:100781319 1241.48