Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium274g00004 ATGGTTAGATTCTGCTGGAAGCCAGCTTCTGTGGGTGATGATGGAGATGTAAATGGGAGAGTTGAGGGACTGCTATGGTACAAGGATTTGGGAAACCATCTTTATGGGGAATTCTCAATGGCTGTGATTCAAGCAAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCTGGACCCTTGACTTCTGACTATCTGGGTCCTCAAGGAACATTTATTGGTGTATACGATGGCCATGGTGGTTCCGCAGCCTCACAGTTTGTCAGTGACAATCTCTTCGCCAATGTCAAGAGTTTCGCAGCTGAGCATCAAGGCATATCAGAGAATGTTATACAAAGGGCCTTTTCTGCAACAGAAGAGGGTTTTCTGTCTGTTGTGAAGAAACAGTGGCTAAGCAAACCACAGATTGCATCTACCGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGCATGCTATATGTTGCAAATGCAGGAGACTCGAGGGTGGTGCTGGGGAGAGTAGAAAGAGCAACAAGGGAAACAACAGCTATCCAATTGTCTGCAGAGCACAACGTTAACATCCAAATGGAGAGAGATGAAGTTCGGACAAGGCACCCCTATGATCCACAAATCGTGGTTAAGAAACACAATGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAACAAGAATTTAACAGGGAGCCTCTGCCGAATAAGTTTAGACTACCCGAACCCTTCTTTAAGCCAATTCTTAGCTATGAACCAGAAATATCAATGCATAAACTTGGTCCTGAAGATCAATTTCTCGTCTTTGCTTCTGATGGTCTGTGGGAGCAACTTAGCAACCAAGAAATTGTGAATATAGTCAGCAATAGTCCACGCAATGGTATTGGTAGGCGACTAGTGAAAGCTGCACTTCGAGAAGCAGCAAGGAAGAGAGAAATGAGAGTGTCAGACCTGCAAAAGATAGAAGAAGGAGTGAGGAGACACTTCCACGATGATATTACAGTTATTGTTGTATATCTAAATCCCAAACTCATAGATAATAGCTCTCTATTGGCTTCTCCTCTTTCAATCAGAGGAGGTGGCTCGGCCAATTTTTAG 1113 0.4367 MVRFCWKPASVGDDGDVNGRVEGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIGVYDGHGGSAASQFVSDNLFANVKSFAAEHQGISENVIQRAFSATEEGFLSVVKKQWLSKPQIASTGTCCLAGIICNGMLYVANAGDSRVVLGRVERATRETTAIQLSAEHNVNIQMERDEVRTRHPYDPQIVVKKHNVWRVKGLIQVSRSIGDAYLKKQEFNREPLPNKFRLPEPFFKPILSYEPEISMHKLGPEDQFLVFASDGLWEQLSNQEIVNIVSNSPRNGIGRRLVKAALREAARKREMRVSDLQKIEEGVRRHFHDDITVIVVYLNPKLIDNSSLLASPLSIRGGGSANF 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium274g00004 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Vium274g00004 370 FunFam Phosphatase 2C family protein 26 355 - -
Vium274g00004 370 Pfam Protein phosphatase 2C 69 307 IPR001932 -
Vium274g00004 370 CDD PP2Cc 35 345 IPR001932 -
Vium274g00004 370 Gene3D - 28 354 IPR036457 -
Vium274g00004 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Vium274g00004 370 PANTHER PROTEIN PHOSPHATASE 35 344 IPR015655 GO:0004722|GO:0006470
Vium274g00004 370 SMART PP2C_4 31 343 IPR001932 -
Vium274g00004 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium274g00004 Vium-Chr274 6761 9226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium274g00004 1 366 PP2C-type Phosphatase Gene Family AT3G12620 65.312 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium274g00004 K01102 - gmx:100815902 654.055