Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2748g00001 ATGGCTCTGATATTGGATCAACAATCAAACTTCAAGCACTTTTGTAAGATTTGCAAGAAAGGTTTTGGTTGTGGAAGAGCTTTGGGAGGACACATGAGGGCTCATGGCATAGGAGATGAAGGTGGTCAAATGGATGATGACGATCAAGCTAGTGATTGGGAAGATAGGTTGGGTGGGAATGTTCCACCAAGCAACAAACGCATGTACGCTTTGAGAACAAACCCTAATAGGCTAAAGAGTTGTAGGGTATGTGAGAATTGTGGCAAGGAGTTTTTGTCGTGGAAATCTTTCCTTGAACATGGAAAATGCACCTCCGAGGATGCCGACTCCTTTGTCTCCTCTCCGGGTTCCGACGCCGATGACGGTGGCATCGCTGGTGGCGACCGAAGAGGATGTGGATGGTCCAAAAGAAAAAGGTCTTTGAGAACTAAGGTTGGTAGCTTCAATTACAATTGCCCATCCAGCGAGGAAGAAGACCTAGCAAATTGTTTAATAATGTTGTCAAATGGCACTGTAGATCCTCTCGCGCCCGAGCCCGAAGAATCCTGTGCATCCGCTAGCAAGGAGGAAGAACAACGGCGAAATCCCATGAATTTCATTGCACCATTGTCGTACAAAGTTAATAATAACAACAACAACAACAATATTCACAACATGAACAACCTCGTTGACAACAAAGCCAAAGGGATTGCCAAGGGTTTGTTCGAATGCAAAGCATGCAAGAAGGTTTTCAATTCACATCAAGCGTTGGGTGGCCATAGAGCAAGCCACAAAAAGGTTAAGGGTTGTTTTGCTGCAAGACTAGACAACCTTGACGACAATCTCATCACCGACGATGATGTAATCACACACGAAGAACTCTTCCCCACAAAATCAAACTCCACCCTCCAATTCGAACATGGATCGAACCCCACGTTGCCCTCATCCTCCTCCTCCAAGAGAAAATCCAAAGTTCATGAATGTTCGATTTGCCATAGGAGTTTCTCTTCGGGACAAGCTCTTGGGGGACACAAAAGGTGTCATTGGATCACATCAAATGCACCCGACACCTCGACGTTAACGAGATTTCAACAGTTTCACGAACACTTGGATCAAATACCCAAGTTTGACACCTCTTCCGAGCCTCTTGATCTCAAATTAGACCTTAACCTTCCTGCACCTTCGAATGACCTTGCAAGAAGGAATGTTTCTACAGAAATTTACTTGCAGCCTTGGGTTACATCAAAGGATGTTAAAGATGATAACAATAGCCAATGTCAAAGTCTACATCACAATAACAACAATGTTGACATTGACAACAACAATGACGAAGACAAAAACACAAATAACCCAATGCAAAATGTGGATAATGAGACTGATAATAAGATCAAGTTGGCCAAACTAAGTGAGCTAAAAGACATGACCGTTGGAGGCACTTCTTCACCATGGTTGCAGGTCGGAATCGGTTCGGCTGCCACTGACGTCACAACTGATAACTCCTGA 1482 0.442 MALILDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEGGQMDDDDQASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDADSFVSSPGSDADDGGIAGGDRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLIMLSNGTVDPLAPEPEESCASASKEEEQRRNPMNFIAPLSYKVNNNNNNNNIHNMNNLVDNKAKGIAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDNLITDDDVITHEELFPTKSNSTLQFEHGSNPTLPSSSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLTRFQQFHEHLDQIPKFDTSSEPLDLKLDLNLPAPSNDLARRNVSTEIYLQPWVTSKDVKDDNNSQCQSLHHNNNNVDIDNNNDEDKNTNNPMQNVDNETDNKIKLAKLSELKDMTVGGTSSPWLQVGIGSAATDVTTDNS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2748g00001 493 Pfam C2H2-type zinc finger 318 343 - -
Vium2748g00001 493 Pfam C2H2-type zinc finger 235 259 - -
Vium2748g00001 493 Pfam C2H2-type zinc finger 13 35 - -
Vium2748g00001 493 SMART c2h2final6 319 341 IPR013087 -
Vium2748g00001 493 SMART c2h2final6 235 257 IPR013087 -
Vium2748g00001 493 SMART c2h2final6 13 35 IPR013087 -
Vium2748g00001 493 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Vium2748g00001 493 ProSitePatterns Zinc finger C2H2 type domain signature. 321 341 IPR013087 -
Vium2748g00001 493 MobiDBLite consensus disorder prediction 293 314 - -
Vium2748g00001 493 MobiDBLite consensus disorder prediction 38 59 - -
Vium2748g00001 493 MobiDBLite consensus disorder prediction 422 452 - -
Vium2748g00001 493 SUPERFAMILY beta-beta-alpha zinc fingers 234 341 IPR036236 -
Vium2748g00001 493 Gene3D Classic Zinc Finger 232 341 - -
Vium2748g00001 493 MobiDBLite consensus disorder prediction 293 312 - -
Vium2748g00001 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 319 341 IPR013087 -
Vium2748g00001 493 PANTHER OS02G0659100 PROTEIN 2 485 - -
Vium2748g00001 493 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Vium2748g00001 493 MobiDBLite consensus disorder prediction 109 129 - -
Vium2748g00001 493 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Vium2748g00001 493 Gene3D Classic Zinc Finger 11 103 - -
Vium2748g00001 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 262 IPR013087 -
Vium2748g00001 493 MobiDBLite consensus disorder prediction 438 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2748g00001 Vium-Chr2748 300 1781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2748g00001 136 384 C2H2 Transcription Factor Family AT1G02040 33.600 1.23e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2748g00001 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2748g00001 - - gmx:100793846 796.578