Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2741g00004 ATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAACAGTTCCCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTGCTTCGAATCCTTTGTCCACTCCAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCACGCCACTTGGGAGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACACCAACAGTACCACCTTCTTCTCTTCTGAGCTTAATAACAACGCTTCTGGTGAAATAGCCAATAGAGAAATTCAGAAGCAGTTCGGTGAAATGCATTACCCTCCTTCTTCGTCTTCTTCGCCTCCTCTTTACCATCATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCTGAGCCTGTGCTTCATTATCATGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAGTAGCAGCGCGATGGGTTTCAAGAAGAATAATGAACAAGACATATATCCTCATCAGGGTTTATCACTGTCACTTTCCTCGAACTCACAATCTAAGCCTTGTTTTGAAGAAGGGTCTGCATCGGATGACCCTACTCAATATTCAAAGTCATTGAAGTCCTCCATGAAGTTGAACGTTCTTTCAAACAATACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATACGGTTCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCCTCTATTTCTGCAGCTGCAACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGGGGGTGCTGCAAAAGGTGTTAGCTATCTGGGTGCTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGATAATACAAATAGCGCTGATGGCGGAGCCACGAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTCGTTTTTTCTCTGCTCAATGTAGAATAATAGTAACCCTTCTGGCCTGTTTGTGTTCCTTACTTTTTTGTCTTGTGTGTTTTTGGTATGTATGTATGGCTAATGTCTGTCAGAGGTTTTTACTGTTTTGTAACATGAAAAAAAGGCCAAATGCTTTAAAACTTCCGTGTGCAACATTAGGTCATTTGGTGTCGATTATTGTGGATGCAAAGCTCATGAAAAGTTTGCTTGTGGAAATATTTACAACAACGATATACGTTCTCAGAATGTGGGTTAAAGCGAAAATGTATATTTGTGTTGGTGTGTCGATTTGTTTTGGAATACTGTGTGCTAATAGTAGAAATGAAGACTCTGCCTATGCAAGAACAGTGTTGCTAGATAACCTTTCACCTGTGCACAGTCCGCTTTCCGAAAGTTCTTTGTTTCTTCCACAATTCCTAAACAAAGTGTTTGAGGTGTTATCCTACCCGGTTGCTATTGTTCAAATCGGAGGGTTATTAGTGGAGGTTGGAATGAGCAGCTTAAGGCCTGAACTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAACAGTTCCCAACATTTGCAAGAGTTCCCAAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAATGGAAACATGCTTGACGAGGCCCTTTATTCATCGGATATGATATCTTTTTCCACTGCCTCGAATCCTTTGTCCACTCCAAGAAACCCGTTGGAGTGTCAAGAACTGATGATGGCTCAGTATGGTTCCACTTCGTTTCCTCATTCATCGTCCCCGAAGGACCAACAATGTGAACCACGCCACTTGGGAGCTAATTGGATGGTGAATTATAACGAAAGCAACCCCAACACCAACAGTACCACCTTCTTCTCTTCTGAGCTTAATAACAACGCTTCTGGTGAAATAGCCAATAGAGAAATTCAGAAGCAGTTCGGTGAAATGCATTACCCTCCTTCTTCGTCTTCTTCGCCTCCTCTTTACCATCATGCTTTGCAGGACATGTCTTACGGCGTTTGGGGAGGAAACCATGCTGAGCCTGTGCTTCATTATCAGGCAAACAACGAGTTACGTTTTGGGGGTGCTAATTTATGGACAAATAGTAGCAGCGCGATGGGTTTCAAGAAGAATAATGAACAAGACATACATCCTCATCAGGGTTTATCACTGTCACTTTCCTCGAACTCACAATCTAAGCCTTGTTTTGAAGAAGGGTCTGCATCGGATGACCCTACTCAATATTCAAAGTCATTGAAGTCCTCCATGAAGTTGAACGTTCTTTCAAACAATACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGATTCTTGAAGCCGTGTCAACAGCTGTTAGATGAGTGGTGCTGTCAATACGGTTCAAAGTCTGCGAAAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCCTCTATTTCTGCAGCTGCAACTGCTGGTGATGCTCTTAATGTTGATGAAAGTGGGGGTGCTGCAAAAGGTGTTAGCTATCTGGGTGCTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGATAATACAAATAGCGCTGATGGCGGAGCCACGAGTAACTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAGATGCAAATGGTTGTTCAATCGTTCGAGTCTGTTGCTGGTCTTAGTTCTGCAACTCCTTATGTCTCCTTGGCTCTCAAGTCAGTATCGAAACACTTCAGATGCTTAAAAGGTGCTATCTCTGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGAATTTTCAATGCCAACTACAAGTAATGGTGGTAAATTTGACAGTAACATGGCAAGGCTAAGGTGCATGGATCAAAGTTTTCAGAAAAACAAATCTTTGGGGGCTAACATAAACTTTCTTGAGCCCCAACAGCACGTGTGGAGACCCCAGAGAGGCTTACCAGAAAGATCAGTGGCAATTCTTAAAGCTTGGCTGTTTGAGCATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAAGCCCACCAAGCCTCTAATAAAAGTGAGCAGGTAGCTTCTGCATCTGAAGGAAGCAACCAGCCCAAATCAGATCACCAACCTGTGAGCAGGTATGGCACGCATGCATCATCACATGCAATCCCTGACAAGCAGTTTCAGTGTTTGGAAATGGGGTCATCATCCTCAGCAGGCAATGAGGAACACATCGGGATGAATGAAGACCAATGGAATCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTGCCACACCAAACATGGATGGAACAGTGATGGGGTTTATGCCCTACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGATCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTGCAACAGCAACAACTGCAACAACAGGAGGAGCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 3999 0.4431 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTASNPLSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPRHLGANWMVNYNESNPNTNSTTFFSSELNNNASGEIANREIQKQFGEMHYPPSSSSSPPLYHHALQDMSYGVWGGNHAEPVLHYHANNELRFGGANLWTNSSSAMGFKKNNEQDIYPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSLKSSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVPEWVSRDVSAASISAAATAGDALNVDESGGAAKGVSYLGASSSVLYSSNENDNTNSADGGATSNFCLSSRPECQKNKAKLLYMQEEVRFFSAQCRIIVTLLACLCSLLFCLVCFWYVCMANVCQRFLLFCNMKKRPNALKLPCATLGHLVSIIVDAKLMKSLLVEIFTTTIYVLRMWVKAKMYICVGVSICFGILCANSRNEDSAYARTVLLDNLSPVHSPLSESSLFLPQFLNKVFEVLSYPVAIVQIGGLLVEVGMSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMISFSTASNPLSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCEPRHLGANWMVNYNESNPNTNSTTFFSSELNNNASGEIANREIQKQFGEMHYPPSSSSSPPLYHHALQDMSYGVWGGNHAEPVLHYQANNELRFGGANLWTNSSSAMGFKKNNEQDIHPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSLKSSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSAKGGGCDVPEWVSRDVSAASISAAATAGDALNVDESGGAAKGVSYLGASSSVLYSSNENDNTNSADGGATSNFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSSATPYVSLALKSVSKHFRCLKGAISDQLKLTCEVLGEEFSMPTTSNGGKFDSNMARLRCMDQSFQKNKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEAHQASNKSEQVASASEGSNQPKSDHQPVSRYGTHASSHAIPDKQFQCLEMGSSSSAGNEEHIGMNEDQWNQEKRSKLECQIAATPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQQEELRRQFGGHMIHDFVG 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2741g00004 1332 MobiDBLite consensus disorder prediction 815 847 - -
Vium2741g00004 1332 Pfam Homeobox KN domain 1126 1165 IPR008422 GO:0003677|GO:0006355
Vium2741g00004 1332 ProSiteProfiles 'Homeobox' domain profile. 1106 1169 IPR001356 GO:0003677
Vium2741g00004 1332 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 767 1195 - -
Vium2741g00004 1332 FunFam BEL1-like homeodomain protein 9 1112 1174 - -
Vium2741g00004 1332 SUPERFAMILY Homeodomain-like 1111 1175 IPR009057 -
Vium2741g00004 1332 MobiDBLite consensus disorder prediction 1181 1220 - -
Vium2741g00004 1332 Gene3D - 1112 1174 - -
Vium2741g00004 1332 Pfam Associated with HOX 295 416 IPR006563 -
Vium2741g00004 1332 Pfam Associated with HOX 880 1050 IPR006563 -
Vium2741g00004 1332 CDD homeodomain 1109 1170 IPR001356 GO:0003677
Vium2741g00004 1332 MobiDBLite consensus disorder prediction 807 847 - -
Vium2741g00004 1332 SMART HOX_1 1109 1173 IPR001356 GO:0003677
Vium2741g00004 1332 MobiDBLite consensus disorder prediction 1183 1217 - -
Vium2741g00004 1332 SMART prehox3 875 1051 IPR006563 -
Vium2741g00004 1332 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2741g00004 Vium-Chr2741 80181 90608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2741g00004 964 1178 Homeobox Transcription Factor Family AT4G34610 52.558 2.23e-65 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium2741g00004 POX 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2741g00004 - - vum:124831694 2622.04