Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2739g00006 ATGGCGACGGATGCTAGGGCGAAGTTCCAGAACGCAGATTTCCGCCCCGATTTTCACGCGGACCTAAAGGTGTCAACTCACGACGGTCTCCACTTCTGGCAGTTCATGATAGCCGGATCTGTTGCCGGCTGTGTCGAGCACATGGCGATGTTTCCCGTTGACACCGTTAAGACCCGCATGCAGGCCTTGGGTTCATGCCCGGTCAAAACCGGCACTGTCCGTCAGGCCCTGAAGTCTATTCTCCAATCTGAGGGACCATCCGCCCTTTACCGAGGAATAGGCGCAATGGGCCTTGGCGCTGGCCCGGCCCATGCCGTCTATTTCTCTGTCTACGAGACCTGCAAGAAGCGTTTATCAGAGGGGAACCCTAACAACGCTGCCGCACACGCGGCCTCTGGTGTCTGCGCCACCGTGGCCAGCGATGCCGTGTTTACGCCGATGGACATGGTGAAGCAGAGGCTGCAGCTGGGGAATAGTGGGTACAAGGGGGTTTGGGATTGTGTGAGAAGGGTTATGAGCGAGGAAGGGTTTCGAGCGTTCTACGCCTCTTATAGGACTACTGTGTTGATGAACGCCCCTTTCACAGCTGTGCATTTCACGACCTATGAGGCCGCAAAACGTGGTCTCATGGAGGTCTCGCCCGAGAGTGTTGATGATGAACGGTTAATTGTGCATGCCACTGCCGGTGCTGTGGCGGGAGCCTTGGCTGCCGCTGTTACGACGCCTCTGGATGTTGTGAAGACTCAATTGCAGTGTCAGGGTGTCTGTGGTTGCGATAGGTTCAAAAGTGGATCAATTCAGGACGTTATTAAAACAATAGTGAAAAAAGATGGGTATAGAGGGCTCATGCGAGGATGGATTCCAAGGATGCTCTTTCATGCTCCGGCAGCTGCTATTTGCTGGTCTACATATGAAGCTGGAAAGTCCTTTTTCCAAGATTTCAATCAGCAGAAAGACGTTGGCACTGTTACCTAA 975 0.5374 MATDARAKFQNADFRPDFHADLKVSTHDGLHFWQFMIAGSVAGCVEHMAMFPVDTVKTRMQALGSCPVKTGTVRQALKSILQSEGPSALYRGIGAMGLGAGPAHAVYFSVYETCKKRLSEGNPNNAAAHAASGVCATVASDAVFTPMDMVKQRLQLGNSGYKGVWDCVRRVMSEEGFRAFYASYRTTVLMNAPFTAVHFTTYEAAKRGLMEVSPESVDDERLIVHATAGAVAGALAAAVTTPLDVVKTQLQCQGVCGCDRFKSGSIQDVIKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQDFNQQKDVGTVT 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2739g00006 324 FunFam Mitochondrial RNA-splicing protein MRS3 11 158 - -
Vium2739g00006 324 FunFam Mitochondrial RNA-splicing protein MRS3 159 322 - -
Vium2739g00006 324 Gene3D Mitochondrial carrier domain 124 324 IPR023395 -
Vium2739g00006 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Vium2739g00006 324 Pfam Mitochondrial carrier protein 221 313 IPR018108 -
Vium2739g00006 324 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Vium2739g00006 324 Pfam Mitochondrial carrier protein 30 120 IPR018108 -
Vium2739g00006 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 310 IPR018108 -
Vium2739g00006 324 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Vium2739g00006 324 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Vium2739g00006 324 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Vium2739g00006 324 PRINTS Mitochondrial carrier protein signature 181 199 IPR002067 GO:0055085
Vium2739g00006 324 PRINTS Mitochondrial carrier protein signature 229 251 IPR002067 GO:0055085
Vium2739g00006 324 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 208 IPR018108 -
Vium2739g00006 324 PANTHER MITOFERRIN-1-RELATED 26 314 - -
Vium2739g00006 324 SUPERFAMILY Mitochondrial carrier 28 305 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2739g00006 Vium-Chr2739 77306 80484 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2739g00006 131 321 Chloroplast and Mitochondria Gene Families AT2G30160 28.866 2.45e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2739g00006 K15113 - gmx:100802640 618.231