Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2739g00002 ATGAACGAGAGTGCGGATCTGGGATTTGTCACCCAAGACAGCCCCAACGCGATGCGAAGCCACGTCATGGAGATTGCCAGCGGCGCCGACATCACCGACTATGTGGTCCAATTCGCGCGGAGGCGTTTGCGCGGTGTGTCCATTCTCAGCGGCAGCGGGGCCGTCGTGAACGTTACTCTTCGCCAGCTCATGGCTCTTGGCGCCGTCCTCTCCCTCACCGGCTCGTTTCTCCCCGGAACATCCCCTCTTGGTGCCATCGGTCTCACCATCTATCTCGCGGGAGGCCAGGGACAGATCATTGGCGGCAGGGTGGTGGGCTCACTGGTGGCGGCTGGTCCAGTTTTGATAATGGCGGGCACGTTTTCCAATGCAACTTACGAGAGATTGCCTTTGGAGGAGGATGATCAGAAGCAGGGTGGTGGCGGCGGGTCTCTACCGGGGATGGGAGGCGGTCCTGGCAAAGCTTGTTCTTCTCCTTGGGGTCATGCTCCTCATGCCAGACCTCCTTTCCAAAGATGA 519 0.5973 MNESADLGFVTQDSPNAMRSHVMEIASGADITDYVVQFARRRLRGVSILSGSGAVVNVTLRQLMALGAVLSLTGSFLPGTSPLGAIGLTIYLAGGQGQIIGGRVVGSLVAAGPVLIMAGTFSNATYERLPLEEDDQKQGGGGGSLPGMGGGPGKACSSPWGHAPHARPPFQR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2739g00002 172 ProSiteProfiles PPC domain profile profile. 15 146 IPR005175 -
Vium2739g00002 172 Pfam Plants and Prokaryotes Conserved (PCC) domain 19 123 IPR005175 -
Vium2739g00002 172 MobiDBLite consensus disorder prediction 133 172 - -
Vium2739g00002 172 Gene3D - 18 138 - -
Vium2739g00002 172 CDD DUF296 19 121 IPR005175 -
Vium2739g00002 172 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 143 IPR014476 GO:0003680
Vium2739g00002 172 SUPERFAMILY AF0104/ALDC/Ptd012-like 15 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2739g00002 Vium-Chr2739 8881 9399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2739g00002 9 170 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 51.269 2.51e-47 154