Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2735g00001 ATGGGTTCAGATAGATCAAGATCTGTGAGATTTCAAGATGAACTTGAGACAAATACGTTAATGGAAAACAAAGAAAAACACTTGTCATTAGTGGCCTGTGATGAGATGAGTAGAAAACACAAGGTTGAGAAGGATGCCATAGGCAAGTCAGGTGATGCAAGAGAACTTTCCAGGGTCTTTTCTGAGGACTATGATTCAGCACAGATTTTGATATTAGATCCCAGGGGAGCTACAATAAATACATGGAATAAAATTTTCTTAGCAGCATGTTTGCTTTCACTGTTTGTGGATCCCCTTTTCTTTTACTTACCAGTGGCTAAGAAAGACAAGTGCATTGATATGTCAACTGCTCTTGAAGTGTTCCTCACCATAATCCGGTCTCTGATAGATGCATTTTACATTATTCAGATTTATTTTCGGTTTCAAACAGCTTATATTGCTCCTTCTTCTCGTGTTTCTGGTAGAGGAGAGCTTATCATAGACTCTTCAAAAATTGCATCAAACTACATGCGAAAAGACTTCTGGCTTGATCTTGTGGCTGCTCAACCACTTCCACAGGTATTAATTTGGGCCGTAATTCCAAATTTAAAAGGGTCTCAAATGATTGCTTCAAGGCATGTTTTGCGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTATCCTCTATCATCTGAAATCGTCAAGGCAAATGGGGTAATGATGGAAAAAGCATGGGCTGGGGCAGCATATAATCTGATGCTCTATATGCTGGCTAGTCATGTTTTAGGATCCTCTTGGTACCTGTTGTCAATTGAACGCCAGAATGAATGTTGGAAGAAAGCTTGTACACTGCAGTACCCACAGTGCCAGTATCATTATCTTGATTGCCAAAGCATGGCTGACCCAGATAGGATTGCTTGGTTAAGATCAAGCAATCTCTCAAGCCTATGTGATCAGAACAGTGACTTCTTTCAATTTGGCATTTTTACTGATGCTCTAAATTTGGAAATTACAGCCTCAAAATTCTTCAACAAGTACTATTACTGTCTGTGGTGGGGACTAAGGAATCTAAGCTCTGTGGGACAAAATCTATTGACTGGCACACGAGTTGCAGAGATCAATTTTGCTGTGATCATTGCAGTTCTTGGATTGGTGCTTTTTGCATTACTCATTGGAAATATGCAAACATACTTGCAATCCACCACTACGCGGCTAGAAGAATGGAGAATAAGAAGAACAGATACGGAAAGATGGATGCGTCACAGGCAGCTCCCTCGTTACCTGAAGCAAAATGTAAGACGTCATGAACAATTCAGATGGGTTGCTACAAGAGGAGTTGATGAGGAAACTATTCTCAGAGACCTTCCCACAGATCTAAGACGTGACATCAAACGCCACCTTTGCCTCAATCTAGTTCGACAAGTACCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTGAAACCTTCTCTTTTCACTCCTGGGGCTTGTGTGGTTCGTGAAGGTGACCTTGTGAATGAGATGCTTTTCATTGTTAGAGGACGCCTAGATTCTTGCACCACCAATGGTGGCAGAACAGGTTTCTTCAACTCATGCAGACTTGGCTCTGGTGACTTCTGTGGTGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTCCAACGGTTGTCCTTCCTTCCTCAACTCGCACAGTGAAAGCCATCACTGAAGTGGAAGCCTTTGCACTCATTGCTGGGGACTTGAAGTTTGTGGCAGCACAGTTCAGAAGGTTGCACAGCAAACAACTGAGGTATACTTTTAGGTTCCACTCCCATCAGTGGAGGACTTGGGCTGCATGCTTCATACAAGCTGCATGGTTCAGGTATAAGAGAATAAAGGAGACAAGTTAG 1896 0.423 MGSDRSRSVRFQDELETNTLMENKEKHLSLVACDEMSRKHKVEKDAIGKSGDARELSRVFSEDYDSAQILILDPRGATINTWNKIFLAACLLSLFVDPLFFYLPVAKKDKCIDMSTALEVFLTIIRSLIDAFYIIQIYFRFQTAYIAPSSRVSGRGELIIDSSKIASNYMRKDFWLDLVAAQPLPQVLIWAVIPNLKGSQMIASRHVLRLVSIFQYLLRLYLIYPLSSEIVKANGVMMEKAWAGAAYNLMLYMLASHVLGSSWYLLSIERQNECWKKACTLQYPQCQYHYLDCQSMADPDRIAWLRSSNLSSLCDQNSDFFQFGIFTDALNLEITASKFFNKYYYCLWWGLRNLSSVGQNLLTGTRVAEINFAVIIAVLGLVLFALLIGNMQTYLQSTTTRLEEWRIRRTDTERWMRHRQLPRYLKQNVRRHEQFRWVATRGVDEETILRDLPTDLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLFTPGACVVREGDLVNEMLFIVRGRLDSCTTNGGRTGFFNSCRLGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAGDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRIKETS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2735g00001 631 CDD CAP_ED 474 605 IPR000595 -
Vium2735g00001 631 SUPERFAMILY Voltage-gated potassium channels 74 396 - -
Vium2735g00001 631 SMART cnmp_10 474 605 IPR000595 -
Vium2735g00001 631 FunFam Cyclic nucleotide-gated ion channel 1 472 590 - -
Vium2735g00001 631 Gene3D Jelly Rolls 472 592 IPR014710 -
Vium2735g00001 631 Gene3D Helix hairpin bin 400 465 - -
Vium2735g00001 631 ProSiteProfiles cAMP/cGMP binding motif profile. 474 559 IPR000595 -
Vium2735g00001 631 Pfam Ion transport protein 81 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium2735g00001 631 Gene3D - 85 398 - -
Vium2735g00001 631 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2735g00001 631 PRINTS EAG/ELK/ERG potassium channel family signature 343 360 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2735g00001 631 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2735g00001 631 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2735g00001 631 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2735g00001 631 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium2735g00001 631 SUPERFAMILY cAMP-binding domain-like 403 596 IPR018490 -
Vium2735g00001 631 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 49 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2735g00001 Vium-Chr2735 2311 6842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2735g00001 48 628 Ion Channels AT2G28260 69.191 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2735g00001 K05391 - gmx:100804375 1188.33