Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2733g00001 ATGGCCTCTGATATCTCGTTTGAGGATCTCAAGAAGAATGTTGATCTTGAAAAGATTCCAGTTGAAGAGGTCTTTGTGCAGCTGAAATGTACCAGACAGGGTCTAACATCTGCAGAAGGAGAGAAGAGGCTCCAGATTTTTGGCTACAATAAATTAGAAGAGAAAAAGGAGTGCAAGGTCCTTAAGTTTTTGGGTTTTATGTGGAATCCTCTATCATGGGTCATGGAGTGTGCAGCTATCATGGCCATTGTATTGGCCAATGGAGGGGGCAAGCCGCCGGATTGGCAAGATTTCACTGGTATTGTAGTGTTGCTTATAGTAAACTCAACCATCAGTTTCATTGAGGAAAACAATGCAGGCAATGCTGCAGCTGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGGGTGAAGAAGATGCATCAATTTTGGTACCTGGAGATATGATTAGCATCAAGTTGGGAGATATCGTCCCTGCCGATGCCCGTCTCTTGGAGGGAGATCCTCTCAAAATTGACCAAGCTGCTCTCACTGGTGAATCCTTGCCAGTCACAAGGAACCCTGGTGATGAAGTATTCTCTGGTTCCACCTGCAAACAAGGAGAAATTGAAGCTGTTGTCATTGCCACTGGTGTCAACACCTTCTTTGGCAAGGCTGCTCATCTTGTAGACAGCACCAACAATGTCGGTCACTTTCAACAGGTGTTGACGTCTATTGGCAACTTTTGTATCTGCTCAATTGCTGTGGGCATGGTGATAGAGATCATTGTCATGTACCCCATCCAGCATAGGTCTTATAGAGATGGCATTGATAACTTATTGGTGCTTCTCATTGGTGGTATTCCAATTGCCATGCCTACTGTCTTGTCTGTGACCATGGCAATTGGGTCTCACCGTTTGTCCGAACAAGGAGCCATCACCAAGAGAATGACAGCCATTGAAGAAATGGCAGGGATGGATGTTCTCTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTACTGTGGATAAGAACTTGATTGAGGTCTTCCCCAGGGGTATGGACAAGGACACTCTTGTCCTATATGCAGCTAGAGCTTCAAGGACTGAAAACCAGGATGCCATTGATTCATCAATTGTGGGAATGTTAAGTGACCCTAAGGAGGCAAGAGCAGGAATCACCGAGGTGCATTTCTTGCCTTTTAATCCTGTGGACAAGCGCACTGCTATTACCTTCATTGACAACAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTGAGCAAATCATTGAACTCTGTGGCCTTAAAGGAGAGGTACTGAAAAGGACACACAAGGTTATTGATGAATATGCTGACCGCGGTCTGCGTTCCTTGGGTGTTGCTCGCCAGAGTGTTCCAGAAAAGACGAAGGAGAGTGCTGGAGATCCATGGGAGTTTTTGGGTCTGCTACCTCTCTTTGATCCTCCAAGGCATGATAGTGCGGAGACCATTCGTCGTGCTATTGAACTTGGAGTCAATGTTAAAATGATCACCGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGTAGACTTGGAATGGGCACCAACATGTACCCTTCATCCTCCCTCCTTGGCGATTCCTCGGATGCAGCCCTTTCTTCAATCTCAGTCGATGAACTCATTGAGAAGGCTGATGGATTTGCCGGAGTCTTCCCTGAGCACAAGTACGAGATTGTAAAGAGGTTGCAGGACAGAAAGCACATTTGTGGCATGACAGGAGATGGTGTGAACGATGCACCAGCACTGAAGAAGGCAGACATCGGCATTGCAGTGGATGATGCAACTGACGCAGCAAGGAGTGCCTCTGATATTGTTCTGACACAACCTGGACTCAGTGTGATTGTGAGTGCTGTGTTGACAAGCAGGGCGATTTTCCAGAGGATGAAGAACTACACAATCTACGCTGTTTCCATCACAATCCGCGTTGTGTTCGGGTTCTTGCTTGTTGCTTTAATATGGAAGTTCGACTTCTCTCCCTTCATGGTTCTCATCATAGCCATCTTGAACGACGGAACCATCATGACCATATCAAAAGACAGAGTGAAACCGTCTCCTTTGCCTGATTCATGGAAACTTAACGAAATCTTTGCCACCGGAATCGTTCTTGGAGCATACATGGCCATCATGACCGCAGTCTTCTTCTACCTCGTTCATGACACTCATTTCTTTTCTGATGTGTTTGGAATACGTTCAATTGCAGAAAGCGAGGAGCAACTTAACTCTGCTCTGTACCTTCAAGTGAGTATCATTAGTCAGGCACTCATCTTTGTCACGAGATCAAGGGGCTGGTCATATCTCGAACGACCTGGCGTGATGCTCATTGTTGCCTTCCTTTGTGCCCAACTGGTGGCCTCTGTGATTGCTGTGTATGCACATTGGGACTTTGCGAAAATCCATGGAGTTGGGTGGGAATGGGCAGGAGCAATCTGGGTCTACAGTATCATCACCTACATTCCTCTTGATATCCTCAAATTTCTCATTCGCATGGGGCTAACAAGCGGTGCTTGCGACACCACGCTCCCAAACAACCCTTAG 2583 0.4673 MASDISFEDLKKNVDLEKIPVEEVFVQLKCTRQGLTSAEGEKRLQIFGYNKLEEKKECKVLKFLGFMWNPLSWVMECAAIMAIVLANGGGKPPDWQDFTGIVVLLIVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWGEEDASILVPGDMISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTRNPGDEVFSGSTCKQGEIEAVVIATGVNTFFGKAAHLVDSTNNVGHFQQVLTSIGNFCICSIAVGMVIEIIVMYPIQHRSYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFPRGMDKDTLVLYAARASRTENQDAIDSSIVGMLSDPKEARAGITEVHFLPFNPVDKRTAITFIDNNGDWHRSSKGAPEQIIELCGLKGEVLKRTHKVIDEYADRGLRSLGVARQSVPEKTKESAGDPWEFLGLLPLFDPPRHDSAETIRRAIELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGDSSDAALSSISVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVDDATDAARSASDIVLTQPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVFGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGIVLGAYMAIMTAVFFYLVHDTHFFSDVFGIRSIAESEEQLNSALYLQVSIISQALIFVTRSRGWSYLERPGVMLIVAFLCAQLVASVIAVYAHWDFAKIHGVGWEWAGAIWVYSIITYIPLDILKFLIRMGLTSGACDTTLPNNP 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2733g00001 860 Gene3D - 341 488 IPR023299 GO:0000166
Vium2733g00001 860 FunFam ATPase 4 plasma membrane-type 574 815 - -
Vium2733g00001 860 Gene3D - 94 815 - -
Vium2733g00001 860 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 FunFam Plasma membrane ATPase 132 216 - -
Vium2733g00001 860 Gene3D - 132 216 - -
Vium2733g00001 860 PANTHER CALCIUM-TRANSPORTING ATPASE 18 851 - -
Vium2733g00001 860 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 806 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium2733g00001 860 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Vium2733g00001 860 FunFam Plasma membrane ATPase 482 636 - -
Vium2733g00001 860 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 845 IPR023298 -
Vium2733g00001 860 Gene3D - 326 625 IPR023214 -
Vium2733g00001 860 SFLD Haloacid Dehalogenase 311 640 - -
Vium2733g00001 860 CDD P-type_ATPase_H 34 841 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vium2733g00001 860 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Vium2733g00001 860 NCBIfam HAD-IC family P-type ATPase 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 NCBIfam HAD-IC family P-type ATPase 563 674 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2733g00001 860 SUPERFAMILY HAD-like 325 635 IPR036412 -
Vium2733g00001 860 SFLD p-type atpase 311 640 IPR044492 -
Vium2733g00001 860 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Vium2733g00001 860 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Vium2733g00001 860 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Vium2733g00001 860 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Vium2733g00001 860 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Vium2733g00001 860 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Vium2733g00001 860 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Vium2733g00001 860 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Vium2733g00001 860 FunFam Plasma membrane ATPase 341 488 - -
Vium2733g00001 860 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Vium2733g00001 860 Pfam E1-E2 ATPase 131 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2733g00001 Vium-Chr2733 6630 12275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2733g00001 1 856 Primary Pumps ATPases AT3G42640 83.664 0.0 1467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2733g00001 K01535 - gmx:100798717 1487.24