Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium272g00003 ATGGTTAGAGGTTGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTCAATTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTAGTCCCCACAACAACATGGACACCATCCCCTTCCAAGTCAACCTTAGCTGTTCTCCAAACAATCATCACTCTCCCCCACCACCCCTCCACAACACAACCGAGATGGACTTCTTCTCCGACAACACCAACAACATCAACGACAACGTTTCTGCTTCTGCCTCTAATCATCATCATTCCACCACCCCACCTACGTTGGAATTCAAACTAAACACTGGGCTGAATCTTCTCACTACCAACACTAGCAGTGATCAATCTATGGTGGATGATGAGATATCACCCAATTCAGAAGACAGAAGAGCGGAGAATAAGCTTGCTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGAGACGCGCTTCATCAGGTTAACGTCAATTACGATGCACTTCAGATGCATTTCATGAATTTGATGCAGCAGAAGGGCGAGGAAGTTGAAGAACAAGAAGTGATTGGTGGAAAGTCAGAAGAGAAGAAGCAAGGAGAGAGTGGCGGGGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACTAATGCTGACACTGAAGAACCCTCTTGTTCATCTGGGGGAAGAAGTCAAGATCGATCAGGATCACCCAACGCAGAAGTGGCCTCGAAGGAATTAGGGACCAGTATGAATGAGAATGTTAATGATGAAGGGCGTGACAAGGAGAAGAAGGAATATGGTAGAGGGGTTGAAAGTGAGGATAGTCCCTCAGGTCATGCTTTTGCTGGGGATAAAGTTCCAAGGTTCAGTCCTCAAAAGAATAACGTTGAACAGGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAAGCACCTATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGATCGAACAGTCCTGAACACAACCTACGAAGGCAATCACAACCACCCTTTGCCACCAGCAGCTATGGCAATGGCACAAACCACTTCCTCAGCTGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCATAATGAATGCAAACTTACTCACAAGAGCACTCCTCCCTTGCTCTTCAAGCATTGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTAACACAATCTCCAAATCCTCTACAGTTCCCAAGGCACCCAAACCAGTTACAAATTCCCCTCCAAGGTATCCCTCAGAATTTTTCAAATTCCCCAGCCTCTTTAATGCCTCAGATATTTGGACAAGCACTCTACAATCAATCAAAGTTTTCTGGTCTTCAAATGCCACATGATGCAGACCCTTCACAATTTGGAAACCACCCTCAGCAGGTACCACCACACCTTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAGCAGCACAACAACAGTAATAATACTAACAATAATGGCAACATGACAGTCAGCAACAGCACTGGCAATGGCAACATCACAACTAGCAACAACACCAACGGGAAGCAATAA 1767 0.4595 MVRGCGLSMDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLSPHNNMDTIPFQVNLSCSPNNHHSPPPPLHNTTEMDFFSDNTNNINDNVSASASNHHHSTTPPTLEFKLNTGLNLLTTNTSSDQSMVDDEISPNSEDRRAENKLAVLQAELERMKRENQKLRDALHQVNVNYDALQMHFMNLMQQKGEEVEEQEVIGGKSEEKKQGESGGVLVPRQFMDLGLATNADTEEPSCSSGGRSQDRSGSPNAEVASKELGTSMNENVNDEGRDKEKKEYGRGVESEDSPSGHAFAGDKVPRFSPQKNNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLNTTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSIMNANLLTRALLPCSSSIATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGIPQNFSNSPASLMPQIFGQALYNQSKFSGLQMPHDADPSQFGNHPQQVPPHLTDTVSAAIAADPNFTAALAAAITSIIGGAQQHNNSNNTNNNGNMTVSNSTGNGNITTSNNTNGKQ 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium272g00003 588 Coils Coil 136 170 - -
Vium272g00003 588 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 112 561 IPR044810 GO:0003700
Vium272g00003 588 MobiDBLite consensus disorder prediction 189 207 - -
Vium272g00003 588 MobiDBLite consensus disorder prediction 500 521 - -
Vium272g00003 588 MobiDBLite consensus disorder prediction 225 305 - -
Vium272g00003 588 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium272g00003 588 ProSiteProfiles WRKY domain profile. 322 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium272g00003 588 MobiDBLite consensus disorder prediction 189 211 - -
Vium272g00003 588 MobiDBLite consensus disorder prediction 118 138 - -
Vium272g00003 588 Gene3D WRKY domain 312 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium272g00003 588 MobiDBLite consensus disorder prediction 556 588 - -
Vium272g00003 588 MobiDBLite consensus disorder prediction 226 261 - -
Vium272g00003 588 SMART WRKY_cls 327 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium272g00003 588 MobiDBLite consensus disorder prediction 80 101 - -
Vium272g00003 588 FunFam probable WRKY transcription factor 31 312 389 - -
Vium272g00003 588 MobiDBLite consensus disorder prediction 262 280 - -
Vium272g00003 588 Pfam WRKY DNA -binding domain 329 386 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium272g00003 Vium-Chr272 10235 12994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium272g00003 73 563 WRKY Transcription Factor Family AT1G62300 49.706 2.06e-131 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium272g00003 WRKY 5.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium272g00003 - - gmx:100797998 720.694