Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2728g00024 ATGGATACCTTGTTTAGGCTAGTAAGTTTTCAACAGCAACAACACCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACTTCTAGCAGTTCCAGATCCTCCAGACAAAACTACTACCATTACTCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTGTCCTCGTCTTCTTCCAGACACTACTACCCTTACCACAACGTATCCACCACCACCACCACCACCACCACAGCCAACACCTTCAGCACCACCGCCAACACCGATTACTCCTACTCCTTCTCTCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAACCGCACGCGCCTTCGCCGACAACAATAGTACTCGCCTCCACCAGCTCCTCTGGATGCTCAACGAACTCAGCTCCCCATACGGCGACACCGATCAAAAACTCGCGGCGTATTTCCTCCAAGCCCTGTTCAGCCGCGTCACCGACGCGGGAGACCGAACCTACCGAACCTTGGCCTCCGCATCGGAGAAAACATGCTCCTTTGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAACGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATTAGCAACACCTATTGCACTCAATGGCCAACCCTTCTGGAGGCATTGGCAACTCGAACCGACGAAACTCCGCACCTCAGGTTAACCACAGTCGTCACCGGGAGAACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGACCTCAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCTATCAACTGCGTGAACGCGCTGCATTCGGTTTCCCCGGCGGGGAACGGCCGCGACGCGTTTATATCGTCGCTGCAAGGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGATTTGGACGTGGGAATCGAGGGCTACGAGTTCGTGAGAGGTTTCGAGGAGTGTTTAAGGTGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGCGAAGACGTGCAACGAGAGGCTTATGCTGGAGCGCGCGGCAGGGAGGGCTGTGGTGGACCTGGTGGCGTGTTCGCCAGCGGATTCGCTGGAGCGTCGGGAGACGGCGGCGCGGTGGGGGACGCGGCTGCATGGGGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTACCGTGCTCCGACACCGGAATATTCCTTTCGTGGAAGGAAACTCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA 1491 0.562 MDTLFRLVSFQQQQHHQPQPDPSLNSTTSRTSSSSRSSRQNYYHYSHQEDEECFNFYMDEEDLSSSSSRHYYPYHNVSTTTTTTTTANTFSTTANTDYSYSFSPTPPLPDFNFQFSPNWSHNLLLETARAFADNNSTRLHQLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTDAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHAGDLSDLNFSQLNLKDDEALAINCVNALHSVSPAGNGRDAFISSLQGLQPRIVTVVEEEADLDVGIEGYEFVRGFEECLRWFRVYFEALDESFAKTCNERLMLERAAGRAVVDLVACSPADSLERRETAARWGTRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMVPCSDTGIFLSWKETPVVWASAWRP 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2728g00024 496 ProSiteProfiles GRAS family profile. 111 495 IPR005202 -
Vium2728g00024 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 485 IPR005202 -
Vium2728g00024 496 MobiDBLite consensus disorder prediction 8 42 - -
Vium2728g00024 496 Pfam GRAS domain family 122 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2728g00024 Vium-Chr2728 244188 246142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2728g00024 1 496 GRAS Transcription Factor Family AT4G37650 59.218 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2728g00024 GRAS 2.7e-102 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2728g00024 - - gmx:100778524 827.78