Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2728g00015 ATGGCGCCGCCGTCGTTTTCTCCTGCTGTCAAACACCACACATCGCCAAACACCACACGCCGCCAAACACCACTGTATTTCTCACAGAGCACCCGTCGCCAAACACCACCATCTCCCTCTTCTCTTCCTTCTTCCTCAACTAATAATGTTACCCTCACATCCACCACCACAACAACTACTCCTACCACCACCCACACTACTCCACATCGAAAATCACAACCTCAGGTGCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCCCGCCACTTTTGCAAGATGTGCCACCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCATCGATGGCGGCTACCGATAAAACAAAAATATCAGCGTGGCGAACTCAGTGGCAAAAGACAGCCTCAACCAAGATGAAAGTCGTTGCATCTGGAGCGGATCTGGAGCTCGACGACGAGGCAGTGGTTGACCACGTGACGGCGAGGCAGCAACGGGGAGGCCGCGGCGGTGTGGGAGCAGCAGCGGGGAGGCGCGAGCAGTGGTTGGATGGCAGCGGGAGAGAAGAATTTCTTCGATGGCAGCAGAGAGAAGAGCGGGTAGACGAACGGGAGCTCGACGACGAGGCAGTGGTGACCATCGCGAAGGAGAGCAGCAACGAGGAGGCCGCAACGGTGAGAAGCAAGCAGCGGGGGGAGGCTGACGAAGCATGTGGTTGGATGGCAGTCGCGAGAGAAAGAATTTCTTCGATGTGGCAGCAGAAGAGAAGAGGAGCACAGATAAGAGAAGAGCAGGTAGGTAGGGTAAATTGA 822 0.556 MAPPSFSPAVKHHTSPNTTRRQTPLYFSQSTRRQTPPSPSSLPSSSTNNVTLTSTTTTTTPTTTHTTPHRKSQPQVPRCDSSNTKFCYYNNYNLTQPRHFCKMCHRYWTKGGALRNVPSMAATDKTKISAWRTQWQKTASTKMKVVASGADLELDDEAVVDHVTARQQRGGRGGVGAAAGRREQWLDGSGREEFLRWQQREERVDERELDDEAVVTIAKESSNEEAATVRSKQRGEADEACGWMAVARERISSMWQQKRRGAQIREEQVGRVN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2728g00015 273 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Vium2728g00015 273 Pfam Dof domain, zinc finger 74 127 IPR003851 GO:0003677|GO:0006355
Vium2728g00015 273 MobiDBLite consensus disorder prediction 10 80 - -
Vium2728g00015 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 162 IPR045174 GO:0003700|GO:0006355
Vium2728g00015 273 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2728g00015 Vium-Chr2728 199264 201226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2728g00015 73 126 C2C2-Dof Transcription Factor Family AT1G51700 74.074 1.17e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2728g00015 zf-Dof 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2728g00015 - - vum:124831668 454.907