Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2728g00013 ATGGAGAGTTATTTGCATGAAAATTTTGGAGGAGTGAAGTCCAAAAACACTACTGACGAAGCTCTTCAAAAATGGAGGAAGGTATGTGGGGTGGTAAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAACATCTCTAAACGTTACGAAGCAGCTGCAATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGTTCAACTAAGCGATTATGTTGTGCCTGATGAAGTTAAAGCTGCTGGTTTCCAAATCTGTGCGGATGAAATGGGGTCTATTGTTGAAGGCCACGACGTAAAGAAGCTTAAGTTTCATGGTGGAGTAAATGGCATTGCAGAAAAGCTCTCAACATCAACCACCACGGGGCTTAGTGGTGATTCTGAATCACGGCGCAGGAGACAAGAGCTTTTTGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTCGAAGCCGTACAAGACATGACTCTCATGATCCTTGGGGCGTGTGCTTTTGTGTCTCTGATAGTTGGCATATTAACGGAAGGATGGCCCAAAGGTGCTCATGATGGCCTTGGAATTGTTGCAAGTATCTTACTAGTAGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAGTTTACTTCCCGGTGACATTGTTCATCTTGCCATTGGAGACCAAGTTCCCGCGGATGGCTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAACCCTTTTCTTCTATCTGGAACCAAGGTTCAAGATGGTTCCTGCACCATGTTGGTTACCACAGTCGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGAGGAGATGATGAAACCCCATTGCAAGTTAAACTGAATGGAGTAGCAACCATTATTGGGAAGATAGGACTATTCTTTGCAGTGGTTACCTTTGCAGTTTTGGTGAAAGGACTCATGGGCCGCAAACTCAAAGAGGGAAGATTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCGGTTACCATTGTCGTTGTTGCTGTCCCAGAGGGGTTACCCCTAGCCGTGACATTGAGCCTTGCATTTGCAATGAAAAAGATGATGAATGACAAGGCCCTGGTGAGGCATTTGGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGCAGTGACAAGACTGGGACATTGACAACCAACCGCATGACTGTGGTGAAAACATGTATTTGTATGAAGGTCAAGGAGGTGAGTAATAATTCTAGTTTGTCCTCTGAACTCCCAGGCCCTGCTTTGAAAATGTTGCTTCAGTCAATATTTAGTAACACTGGAGGAGAAGTTGTGGTTAACAAGAAAGGTAAGCGTGAGATCTTGGGGACTCCAACAGAGTCAGCACTGTTGCAGTTTGGCTTATCATTGGGTGGGGATTTTCATGCAGAGAGACAAACATGTAAGATTGTTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTGGTTTTGGAGATCCCTGGAGGAGCTTTAAGGGCTCATTGTAAAGGTGCTTCCGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAGAGGGTGTTGTTGTCTCCATCGATGAAGAATCGGGTAATTATCTCACGAGTACAATCAACCAGTTTGCTGGTGAGGCACTAAGAACTCTCTGCCTTGCATATATTGAATTGGAAAATGGGTTTTCAGATCAAGACCCTATTCCTGCAACTGGCTACACTTGTATAGGAGTTGTTGGTATCAAAGATCCTGTTCGTCCTGGCGTTAAGGAATCGGTTGATGTGTGTCGATCTGCTGGAATAATGGTGAGAATGGTTACGGGAGACAATATAAATACTGCAAAGGCCATAGCCAGGGAATGTGGGATTTTAACAGATGATGGCATAGCCATTGAGGGTCCAGACTTCAGAGAGAAGACTCAGGAGGAATTGTTTGATCTAATTCCCAAAATTCAGGTTATGGCTCGATCATCACCTCTAGACAAACATACACTAGTGAAACACCTACGTACCACGTTCGGTGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCTGACATTGGACTTGCTATGGGAATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATTATTTTGGATGATAATTTCTCCACAATAGTGACAGTAGCTAAATGGGGGCGTTCAGTTTACATAAATATTCAGAAATTCGTACAGTTCCAGCTCACTGTAAATGTGGTTGCATTACTAGTGAACTTCACGTCAGCATGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACAGAACCCCCAACTGATGATTTGATGAAGCGTGCACCAGTTGGGAGGAGAGGTGACTTCATCAACAATGTCATGTGGAGGAATATCTTAGGACAATCATTGTATCAGTTTGTGGTGATATGGTTTCTTCAGACAGTAGGTAAATGGGTCTTTTTCATCAGAGGCCCGAATGCTGAAGTGGTTTTAAACACTCTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGGTAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATGGGATAATCATGTGTTTATAGGTGTCCTCGGTTGCACTGTTTTCTTTCAAATCGTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACACCTCTCAGTCTGGTACAATGGATCTTCTGCTTAGGGGTTGGATATGGAAGCATGCCACTAGCAGTTCGCTTAAAGCAGATCCCCGTCTGA 3042 0.4356 MESYLHENFGGVKSKNTTDEALQKWRKVCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYVVPDEVKAAGFQICADEMGSIVEGHDVKKLKFHGGVNGIAEKLSTSTTTGLSGDSESRRRRQELFGVNKFTESEVRSFWVFVFEAVQDMTLMILGACAFVSLIVGILTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYSLLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMGRKLKEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVKEVSNNSSLSSELPGPALKMLLQSIFSNTGGEVVVNKKGKREILGTPTESALLQFGLSLGGDFHAERQTCKIVKVEPFNSEKKRMGVVLEIPGGALRAHCKGASEIILAACDKVINSEGVVVSIDEESGNYLTSTINQFAGEALRTLCLAYIELENGFSDQDPIPATGYTCIGVVGIKDPVRPGVKESVDVCRSAGIMVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELFDLIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRRGDFINNVMWRNILGQSLYQFVVIWFLQTVGKWVFFIRGPNAEVVLNTLIFNTFVFCQVFNEVNSREMEEIDVFKGIWDNHVFIGVLGCTVFFQIVIVEYLGTFANTTPLSLVQWIFCLGVGYGSMPLAVRLKQIPV 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2728g00013 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1012 IPR023298 -
Vium2728g00013 1013 SMART Cation_ATPase_N_a_2 115 190 IPR004014 -
Vium2728g00013 1013 FunFam Calcium-transporting ATPase 463 656 - -
Vium2728g00013 1013 Pfam Cation transport ATPase (P-type) 512 590 - -
Vium2728g00013 1013 Pfam E1-E2 ATPase 237 431 - -
Vium2728g00013 1013 CDD P-type_ATPase_Ca_PMCA-like 144 885 - -
Vium2728g00013 1013 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00013 1013 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00013 1013 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00013 1013 FunFam Calcium-transporting ATPase 17 77 - -
Vium2728g00013 1013 Pfam Cation transporting ATPase, C-terminus 837 1006 IPR006068 -
Vium2728g00013 1013 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium2728g00013 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Vium2728g00013 1013 FunFam Calcium-transporting ATPase 769 1013 - -
Vium2728g00013 1013 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Vium2728g00013 1013 FunFam Calcium-transporting ATPase 645 797 - -
Vium2728g00013 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 661 IPR023299 GO:0000166
Vium2728g00013 1013 Gene3D - 463 656 IPR023299 GO:0000166
Vium2728g00013 1013 Gene3D - 168 998 - -
Vium2728g00013 1013 Gene3D - 139 336 - -
Vium2728g00013 1013 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Vium2728g00013 1013 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Vium2728g00013 1013 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Vium2728g00013 1013 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Vium2728g00013 1013 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
Vium2728g00013 1013 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Vium2728g00013 1013 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Vium2728g00013 1013 Gene3D - 450 797 IPR023214 -
Vium2728g00013 1013 PANTHER CATION TRANSPORTING ATPASE 59 1012 - -
Vium2728g00013 1013 FunFam Calcium-transporting ATPase 216 336 - -
Vium2728g00013 1013 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Vium2728g00013 1013 SUPERFAMILY HAD-like 451 857 IPR036412 -
Vium2728g00013 1013 SFLD p-type atpase 435 804 IPR044492 -
Vium2728g00013 1013 NCBIfam HAD-IC family P-type ATPase 545 697 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00013 1013 NCBIfam HAD-IC family P-type ATPase 386 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00013 1013 NCBIfam HAD-IC family P-type ATPase 723 838 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00013 1013 SFLD Haloacid Dehalogenase 435 804 - -
Vium2728g00013 1013 Gene3D - 18 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2728g00013 Vium-Chr2728 183958 188708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2728g00013 1 1013 Primary Pumps ATPases AT4G37640 80.197 0.0 1679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2728g00013 K01537 - gmx:100815662 1860.11