Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2728g00012 ATGGAGAGTTATTTGCATGAAAATTTTGGAGGAGTGAAGTCCAAAAACACTACTGACGAAGCTCTTCAAAAATGGAGGAAGGTATGTGGGGTGGTAAAGAACCCCAAACGACGCTTTCGTTTCACTGCCAACATCTCTAAACGTTACGAAGCAGCTGCAATGCGTCGTACCAATCAGGAGAAGCTAAGGGTTGCTGTTTTGGTTTCCAAAGCTGCATTTCAATTTATCCAAGGTGTTCAACTAAGCGATTATGTTGTGCCTGATGAAGTTAAAGCTGCTGGTTTCCAAATCTGTGCGGATGAAATGGGGTCTATTGTTGAAGGCCACGACGTAAAGAAGCTTAAGTTTCATGGTGGAGTAAATGGCATTGCAGAAAAGCTCTCAACATCAACCACCACGGGGCTTAGTGGTGATTCTGAATCACGGCGCAGGAGACAAGAGCTTTTTGGAGTCAATAAATTCACTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTTCGAAGCCGTACAAGACATGACTCTCATGATCCTTGGGGCGTGTGCTTTTGTGTCTCTGATAGTTGGCATATTAACGGAAGGATGGCCCAAAGGTGCTCATGATGGCCTTGGAATTGTTGCAAGTATCTTACTAGTAGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCGTTGCAATTCAAGGACTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTTACAAGAAACGGTTACAGGCAGAAAATGTCAATATATAGTTTACTTCCCGGTGACATTGTTCATCTTGCCATTGGAGACCAAGTTCCCGCGGATGGCTTATTTGTTTCAGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTGACTTCCCAAAACCCTTTTCTTCTATCTGGAACCAAGGTTCAAGATGGTTCCTGCACCATGTTGGTTACCACAGTCGGGATGAGGACTCAATGGGGCAAGTTGATGGCAACTCTGAGTGAAGGAGGAGATGATGAAACCCCATTGCAAGTTAAACTGAATGGAGTAGCAACCATTATTGGGAAGATAGGACTATTCTTTGCAGTGGTTACCTTTGCAGTTTTGGTGAAAGGACTCATGGGCCGCAAACTCAAAGAGGGAAGATTCTGGTGGTGGTCAGCAGATGATGCAATGGAGATGTTGGAATTCTTTGCCATTGCGGTTACCATTGTCGTTGTTGCTGTCCCAGAGGGGTTACCCCTAGCCGTGACATTGAGCCTTGCATTTGCAATGAAAAAGATGATGAATGACAAGGCCCTGGTGAGGCATTTGGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGCAGTGACAAGACTGGGACATTGACAACCAACCGCATGACTGTGGTGAAAACATGTATTTGTATGAAGGTCAAGGAGGTGAGTAATAATTCTAGTTTGTCCTCTGAACTCCCAGGCCCTGCTTTGAAAATGTTGCTTCAGTCAATATTTAGTAACACTGGAGGAGAAGTTGTGGTTAACAAGAAAGGTAAGCGTGAGATCTTGGGGACTCCAACAGAGTCAGCACTGTTGCAGTTTGGCTTATCATTGGGTGGGGATTTTCATGCAGAGAGACAAACATGTAAGATTGTTAAAGTTGAGCCATTCAACTCTGAGAAGAAAAGAATGGGTGTGGTTTTGGAGATCCCTGGAGGAGCTTTAAGGGCTCATTGTAAAGGTGCTTCCGAAATAATTCTGGCTGCTTGTGACAAGGTGATAAACTCAGAGGGTGTTGTTGTCTCCATCGATGAAGAATCGGGTAATTATCTCACGAGTACAATCAACCAGTTTGCTGGTGAGGCACTAAGAACTCTCTGCCTTGCATATATTGAATTGGGTCCAGACTTCAGAGAGAAGACTCAGGAGGAATTGTTTGATCTAATTCCCAAAATTCAGGTTATGGCTCGATCATCACCTCTAGACAAACATACACTAGTGAAACACCTACGTACCACGTTCGGTGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCCCCGGCCCTTCATGAAGCTGACATTGGACTTGCTATGGGAATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATTATTTTGGATGATAATTTCTCCACAATAGTGACAGTAGCTAAATGGGGGCGTTCAGTTTACATAAATATTCAGAAATTCGTACAGTTCCAGCTCACTGTAAATGTGGTTGCATTACTAGTGAACTTCACGTCAGCATGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGCTGGGAGCACTTGCACTTGCAACAGAACCCCCAACTGATGATTTGATGAAGCGTGCACCAGTTGGGAGGAGAGGTGACTTCATCAACAATGTCATGTGGAGGAATATCTTAGGACAATCATTGTATCAGTTTGTGGTGATATGGTTTCTTCAGACAGTAGGTAAATGGGTCTTTTTCATCAGAGGCCCGAATGCTGAAGTGGTTTTAAACACTCTTATTTTCAACACATTTGTATTCTGTCAGGTTTTCAATGAGGTAAATTCACGTGAGATGGAGGAAATAGATGTTTTTAAAGGCATATGGGATAATCATGTGTTTATAGGTGTCCTCGGTTGCACTGTTTTCTTTCAAATCGTAATAGTTGAGTACTTGGGAACCTTTGCCAACACAACACCTCTCAGTCTGGTACAATGGATCTTCTGCTTAGGGGTTGGATATGGAAGCATGCCACTAGCAGTTCGCTTAAAGCAGATCCCCGTCTGA 2820 0.4355 MESYLHENFGGVKSKNTTDEALQKWRKVCGVVKNPKRRFRFTANISKRYEAAAMRRTNQEKLRVAVLVSKAAFQFIQGVQLSDYVVPDEVKAAGFQICADEMGSIVEGHDVKKLKFHGGVNGIAEKLSTSTTTGLSGDSESRRRRQELFGVNKFTESEVRSFWVFVFEAVQDMTLMILGACAFVSLIVGILTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYSLLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVKGLMGRKLKEGRFWWWSADDAMEMLEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMKVKEVSNNSSLSSELPGPALKMLLQSIFSNTGGEVVVNKKGKREILGTPTESALLQFGLSLGGDFHAERQTCKIVKVEPFNSEKKRMGVVLEIPGGALRAHCKGASEIILAACDKVINSEGVVVSIDEESGNYLTSTINQFAGEALRTLCLAYIELGPDFREKTQEELFDLIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFTSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRAPVGRRGDFINNVMWRNILGQSLYQFVVIWFLQTVGKWVFFIRGPNAEVVLNTLIFNTFVFCQVFNEVNSREMEEIDVFKGIWDNHVFIGVLGCTVFFQIVIVEYLGTFANTTPLSLVQWIFCLGVGYGSMPLAVRLKQIPV 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2728g00012 939 SMART Cation_ATPase_N_a_2 115 190 IPR004014 -
Vium2728g00012 939 Gene3D - 139 336 - -
Vium2728g00012 939 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 631 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vium2728g00012 939 Pfam E1-E2 ATPase 237 431 - -
Vium2728g00012 939 PANTHER CATION TRANSPORTING ATPASE 72 628 - -
Vium2728g00012 939 Pfam Cation transporter/ATPase, N-terminus 117 185 IPR004014 -
Vium2728g00012 939 FunFam Calcium-transporting ATPase 463 647 - -
Vium2728g00012 939 Pfam Cation transport ATPase (P-type) 512 590 - -
Vium2728g00012 939 Gene3D - 168 449 - -
Vium2728g00012 939 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Vium2728g00012 939 Gene3D - 463 631 IPR023299 GO:0000166
Vium2728g00012 939 Gene3D - 450 462 IPR023214 -
Vium2728g00012 939 Gene3D - 632 723 IPR023214 -
Vium2728g00012 939 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Vium2728g00012 939 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Vium2728g00012 939 PRINTS P-type cation-transporting ATPase superfamily signature 702 714 - -
Vium2728g00012 939 PRINTS P-type cation-transporting ATPase superfamily signature 678 697 - -
Vium2728g00012 939 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Vium2728g00012 939 Gene3D - 724 924 - -
Vium2728g00012 939 Gene3D - 18 77 - -
Vium2728g00012 939 Pfam Cation transporting ATPase, C-terminus 763 932 IPR006068 -
Vium2728g00012 939 NCBIfam HAD-IC family P-type ATPase 649 764 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00012 939 NCBIfam HAD-IC family P-type ATPase 386 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2728g00012 939 SUPERFAMILY HAD-like 627 726 IPR036412 -
Vium2728g00012 939 FunFam Calcium-transporting ATPase 216 336 - -
Vium2728g00012 939 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516
Vium2728g00012 939 FunFam Calcium-transporting ATPase 695 939 - -
Vium2728g00012 939 FunFam Calcium-transporting ATPase 17 77 - -
Vium2728g00012 939 PRINTS Sodium/potassium-transporting ATPase signature 203 223 - -
Vium2728g00012 939 PRINTS Sodium/potassium-transporting ATPase signature 446 467 - -
Vium2728g00012 939 PRINTS Sodium/potassium-transporting ATPase signature 574 592 - -
Vium2728g00012 939 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 634 IPR023299 GO:0000166
Vium2728g00012 939 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 938 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2728g00012 Vium-Chr2728 183958 188708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2728g00012 1 939 Primary Pumps ATPases AT4G37640 62.759 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2728g00012 K01537 - gmx:100815662 1134.4