LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2728g00011	ATGAAACCTCACCATCATCATTTCACCTTCTTTTTCATTCTATCATCATTCTCTCTACTTCCCACTTTCAGAGCTATCAACACAACAACTCAATTCCGCATTTTCAATGAAACAAGAAGGATTCTCCACCAGCCTCTGTTCCCGGAGCTCTCAGCTCCGCCGCCACTCACCCCACCGCCCCCTCCGCCCCCGGATATTCCTTCTTCTCCCGACATTCCTTTCTTCAATGAGTATCCCGCGGGGCAGCCGCCGCCAGTTCAGAACCTGCCTCCGGTTACATCCTCCGGCGCCGTGATCGCGAACCCGACGGCGACACAGCCCACGAAGCCGGCCAAGAAGGTGGCAATTGCGATCTCCGTGGGAATCGTGACCCTGGGAATGTTCTCCGCGTTGGGCTTCTTCTTGTACAGGCACAGAGCAAAACACCCAGTGGAAACGCAGAAACTCGTTTCTCGTAGGCTTCCGGAAGATTCTCCGCGGGCCCCACCACCCTCGAGCTTCCTCTACATTGGAACAGTGGAGCCCGCCAGAACGTCGCTCACCGAACCCAACGGAACGAACATTATCACTTCTCCTTATCGAAAGCTTGATTCTGTTAAGCTTAACTCCGATCACCGATACCGCCCCAGTCCCGAGTTGCAGCCGCTGCCGCCGCCTCAAAAGCCGCCGGACGAAAGCCACTCGCCGCCGGCAGGATTCTCCGACACATCATCGTCGTCCGAGGAGGAAAGCTGTGAGACGGCATTTCACTCGCCGCACGGGTCGTCGCTAAGCCGCGAAGAGAATTGTTTCACGCCGGTGTCGCGCCACAGTTGTCTCGCCGCCGCCATACCAGCGGCGGCTGCTGCTGGTCCGGTGGTTCCTTACTCGAAGAGAACTTCACCGAAATCCAGGTTCTCTGCTCCTTCGCCGGATATCAGAAATATGATCGTACCGCCGGCGAAGCATTCTCCACCGCCGTCACAGGCGCCACCAGCTTCAACCAAATATCAGCAAATAGAAAAAGTAACTAGCATGGGTCCTTCTAGAAGACCGAAATTCTCATCGCCTCCCCCAGCACCGAATTTGACTCATCTTATTAAGCCTACCGCTCCACCTCCTCCACCTCCTCCTCCTCCCCCGCCGCCGCCGTTTCAGAAGGGTTGGTCTCCGTCAATCAGTGCATCTTCGTCCTCTGTGCCAAGGAAGCAGCGAGAGTCTTGGTCTCGAAATGGAGGAGGGTCTTCTGCTAACAGTGTTAGTGTAAGGAAAGGTTCTACTGAGGAAGTTGACAAAAGGCATGGAGGTGATGACGTGGGTGGAGCGAAACCCAAGTTGAAGGCTCTGCATTGGGATAAAGTTTGTGCTACTTCGGACCGTACCACTGTGTGGGATCAGTTAAAATCCAGCTCCTTTCAGTTAAATGAGGACATGATGGAGACCCTGTTTGGCTGCAAATCTACAGGTTCTGCTTTTAAAGAGACTGTCACTAGGAGATCAGTTCTTCCCCCTGTTGAACTCGAAAATAGGGTGTTAGACCCCAAGAAATCCCAAAACATAGCTATACTCCTAAGGGCACTTAATGTCACAAGAGATGAGGTCTGCGAAGCTCTTTTGGATGGAAACCCTGAAGGTTTGGGAACTGAGTTATTGGAGACTCTAGTGAAGATGGCTCTAACAAAGGAGGAGGAAATAAAACTTAAAAATTATAATGGTGACCTATCAAGACTTGGTTCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTAGCTTTTAAAAGAATTGAAGCAATGCTGTACAGAGCTAATTTCGAAACAGAAGTTAACTACCTTAGGAAGTCCTTTCAGACACTGGAGGCTGCAAGTGAGGAATTAAAGCACAGTCGGCTATTCCTCAAACTTCTCGAAGCCGTTCTAAGGACAGGAAACAGAATGAATGTTGGCACAAACCGTGGTGATGCTAAATCTTTCAAACTGGACACACTTCTAAAACTGGTAGATATAAAGGGCACAGATGGGAAGACAACGCTTCTCCACTTTGTGGTCCAAGAGATCATTAGATCTGAAGGAACAGGTGGTGAATCTGCGAACGAAAATGTTCAAAACCAGACAACTTCCCAATTCAACGAGGACGAGTTCAGAAAGAAAGGATTGCAGGTTGTGGCTGGACTGAGTAGAGACCTAGGTAATGTCAAAAAGGCAGCAGGAATGGACTCGGATGTGTTGAGAAGCTATGTCTCAAAGCTTGAAAGTGGGCTAGATAAAGTGAGCTTAGTTTTGCAATGCAGAAAGCCTGATATGTATGGAAATTTCTTTAATTCAACCGGGCTATTTCTGAAAGACGCTGAAGCGGAAATTGTTAGGATCAAGGCTGATGAGAGAAAGGCCTTGTTCCTTGTGAAAGAAGTTACAGACTACTTTCATGGTGATGCAGCAAAGGAAGAGGCGCACCCTTTCAGAATTTTTATGATTGTGAGAGACTTTTTAAATAGTTTGGATCAAGTCTGTAAAGAAGTGGGAAGGATGCAAGACAGAACTGTGGTTGGTTCAGCTAGATCCTTCAGGATAGCCGCAAGTGCATCATTACCTGTTCTCAACAGATACCATGCAAGACAAGATAGCAGTTCAGACGAGGAAAGTTTATCCCCCTAG	2637	0.4896	MKPHHHHFTFFFILSSFSLLPTFRAINTTTQFRIFNETRRILHQPLFPELSAPPPLTPPPPPPPDIPSSPDIPFFNEYPAGQPPPVQNLPPVTSSGAVIANPTATQPTKPAKKVAIAISVGIVTLGMFSALGFFLYRHRAKHPVETQKLVSRRLPEDSPRAPPPSSFLYIGTVEPARTSLTEPNGTNIITSPYRKLDSVKLNSDHRYRPSPELQPLPPPQKPPDESHSPPAGFSDTSSSSEEESCETAFHSPHGSSLSREENCFTPVSRHSCLAAAIPAAAAAGPVVPYSKRTSPKSRFSAPSPDIRNMIVPPAKHSPPPSQAPPASTKYQQIEKVTSMGPSRRPKFSSPPPAPNLTHLIKPTAPPPPPPPPPPPPPFQKGWSPSISASSSSVPRKQRESWSRNGGGSSANSVSVRKGSTEEVDKRHGGDDVGGAKPKLKALHWDKVCATSDRTTVWDQLKSSSFQLNEDMMETLFGCKSTGSAFKETVTRRSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVCEALLDGNPEGLGTELLETLVKMALTKEEEIKLKNYNGDLSRLGSAERFLKAVLDIPLAFKRIEAMLYRANFETEVNYLRKSFQTLEAASEELKHSRLFLKLLEAVLRTGNRMNVGTNRGDAKSFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGTGGESANENVQNQTTSQFNEDEFRKKGLQVVAGLSRDLGNVKKAAGMDSDVLRSYVSKLESGLDKVSLVLQCRKPDMYGNFFNSTGLFLKDAEAEIVRIKADERKALFLVKEVTDYFHGDAAKEEAHPFRIFMIVRDFLNSLDQVCKEVGRMQDRTVVGSARSFRIAASASLPVLNRYHARQDSSSDEESLSP	878

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	418	436	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	150	169	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	49	70	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	285	436	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	326	344	-	-
	Vium2728g00011	878	Gene3D	Formin, FH2 domain	432	839	IPR042201	-
	Vium2728g00011	878	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	429	853	IPR015425	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	211	226	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	203	260	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	382	417	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	345	381	-	-
	Vium2728g00011	878	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	367	840	-	-
	Vium2728g00011	878	SMART	it6_source	429	842	IPR015425	-
	Vium2728g00011	878	Pfam	Formin Homology 2 Domain	436	827	IPR015425	-
	Vium2728g00011	878	PANTHER	FORMIN-RELATED	11	872	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	230	260	-	-
	Vium2728g00011	878	MobiDBLite	consensus disorder prediction	49	73	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2728g00011	Vium-Chr2728	179256	183643	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2728g00011	414	870	FH2 protein (formin) Gene Family	AT5G67470	71.304	0.0	626

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2728g00011	-		-	gmx:100803578	1309.66