Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2728g00006 ATGAGAGGAGAAGAGTTAGCGTTTGCAATTGGTCCAAACATGGTGGTGGTGACTGTGAGAGAGTTCGACCCAAGTAAAGACACAGAGGGAGTGGAAGCCGTTGAGAGAATATGTGAGGTTGGACCCAGTGGGAAGCTTTCCCTCTTCACCGACCTCCACGGTGACCCTATTTGCAGGGTCCGCAACTCACCTACTTTCCTAATGCTGGTAGCCGAAGTTGGTCAAGAGACAGTGGGAATGATAAGGGGTTGCATCAAAACCGTTACATGCGGAAAGAAGCTCCACAGGCACGGAAAGAACACCACCGAACCTGCTTCCAAACAAGTCCCTGTCTACACCAAACTAGCCTACATATTGGGCCTCCGGGTTTCTCCTCACCACAGGAGAATGGGAATAGGGTTCAAACTGGTCCAGAGATTGGAGGAGTGGTTCAGAGACAACGGAGCAGAGTACGCTTACATGGCAACAGAAAAGGATAACGTGGCTTCCGTTAAGCTCTTTACCGACAAATGCGGCTACTCAAAGTTTCGTACCCCGTCCATCCTCGTCAACCCCGTTTTTGCCCACTCACTCAGACCCTCCTCCGACGTCACCGTCATACAACTTGCCCCAAACGACGCCGAGTTGCTCTACCGCACCAAGTTCGCCACCACCGAGTTCTTCCCCCGCGACGTCGACTCCGTCCTCAACAACCACCTCACTCTGGGCACCTTCCTCGCCGTTCCTCGCGGCTCATACTCCCCCGACACGTGGCCGGGTTCGCTCCGCTTTCTCGCGGACCCACCCTCCTCCTGGGGCCTCCTCAGCGTGTGGAACTGCAAGGACGTGTTCACGCTCCAGGTGAGGGGCGTGTCGCGCGTGAAGAAGGCCATCGCAAAGACCACTCGCCTCCTCGACCGCGCCTTCCCCTGGCTGCGCCTGCCCTCCATCCCCAACTTCTTCCAGCCCTTTGGGTTTCACTTTTTGTACGGGCTCGGAGGAGAGGGCCCACGGGCCCAGAAAATGGTGAGGGCTTTGTGCGCCTTCGCTCATAACCTCGCCAAGGATAGTGGGTGCCAGGTGGTGGCGACGGAGGTTTCAGGGCAGGAGCCCCTACGCTGCGCCATCCCACACTGGAAGATGCTCTCTTGCGAAGAGGATTTGTGGTGCATCAAGAGACTCGGGGAAGATTACAGCGACGGTGCGGTTGGTGATTGGACCAAATCCCCTCCCGGATTCTCAATTTTTGTTGATCCCAGAGAGTTCTAA 1248 0.5625 MRGEELAFAIGPNMVVVTVREFDPSKDTEGVEAVERICEVGPSGKLSLFTDLHGDPICRVRNSPTFLMLVAEVGQETVGMIRGCIKTVTCGKKLHRHGKNTTEPASKQVPVYTKLAYILGLRVSPHHRRMGIGFKLVQRLEEWFRDNGAEYAYMATEKDNVASVKLFTDKCGYSKFRTPSILVNPVFAHSLRPSSDVTVIQLAPNDAELLYRTKFATTEFFPRDVDSVLNNHLTLGTFLAVPRGSYSPDTWPGSLRFLADPPSSWGLLSVWNCKDVFTLQVRGVSRVKKAIAKTTRLLDRAFPWLRLPSIPNFFQPFGFHFLYGLGGEGPRAQKMVRALCAFAHNLAKDSGCQVVATEVSGQEPLRCAIPHWKMLSCEEDLWCIKRLGEDYSDGAVGDWTKSPPGFSIFVDPREF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2728g00006 415 Pfam Acetyltransferase (GNAT) family 65 173 IPR000182 GO:0016747
Vium2728g00006 415 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 17 192 IPR000182 GO:0016747
Vium2728g00006 415 Gene3D - 50 179 - -
Vium2728g00006 415 CDD NAT_SF 68 153 - -
Vium2728g00006 415 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 16 415 - -
Vium2728g00006 415 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 56 175 IPR016181 -
Vium2728g00006 415 FunFam Probable N-acetyltransferase HLS1-like 26 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2728g00006 Vium-Chr2728 121295 123429 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vium2728g00006 Acetyltransf_1 5.6e-18 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2728g00006 - - gmx:100775317 729.169