Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2728g00001 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAGGGATGTAGCGAATCCTGTGTGTTGCGTCCTTGTTTGCAGTGGATCGAAACCTCCGAAGCTCAAGGCCATGCCACCGTCTTCGTTGCCAAATTCTTTGGCCGCGCTGACCTCATGTCCTTCATTTCCAACGTTCCAGAAAATCAAAGACCTGCTCTGTTTCAGTCCTTGCTGTTCGAAGCATGCGGGAGAACGGTCAACCCCGTCAACGGTGCCGTGGGCCTTCTCTGGACCGGAAACTGGCACGTCTGCCAGGCGGCCGTCGAGACCGTGCTCCGCGGGGGTACGCTCAGGCCCATGCCGGAGCTCATGGGACTCGCCTCTCCCGCTGCCGACGAGACATCGGAAGTTGCATGCTCCGACATTTGGAGAATCCGAGACCCGAACCCGACTTGTGGCTTCACGAACACCAGATCCCATACCAGAGTCTCCTCCGCCAGCAAACGCAAGCGGTTGGAGGAGCCGGCGAAGCTTCAAGCGGCGCCGAATCTCGATCTCCGACTGACGCCTATTTTCCTGCAGAAGAAGGTTGAAAACCGGCGGCCGGTGTCGCCCTCGATGACCTCCGAGGAGTCAGGCACCACGACGGCGTGCTTGGAGAGCAAATTCGGGGATCAGTGGGGTCACAGTGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 693 0.5786 MSCNGCRVLRKGCSESCVLRPCLQWIETSEAQGHATVFVAKFFGRADLMSFISNVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPMPELMGLASPAADETSEVACSDIWRIRDPNPTCGFTNTRSHTRVSSASKRKRLEEPAKLQAAPNLDLRLTPIFLQKKVENRRPVSPSMTSEESGTTTACLESKFGDQWGHSGDRKVLNLFI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2728g00001 230 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vium2728g00001 230 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vium2728g00001 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2728g00001 Vium-Chr2728 61515 62857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2728g00001 1 229 AS2 family AT3G49940 56.972 2.98e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2728g00001 LOB 6.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2728g00001 - - gmx:100816480 369.777