Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2727g00012 ATGAATACAGAAGAGAAAGATACGATTGGCGGAGAATCTTCCCTTCATTTTCCCACACCCGATGGCAACTCTGATCATTTGCTTCATTTACTCTATGCTTTAGATTCACAAGGTTGGCCTTTGCTCTCTCCTCTGAACGTTCAGTTGCATAAGTGTGACAAATGTACTCGAGAGTTTTGCTCCCCCATGAACTATAGAAGACATATTCGTGTAGATCATAGGAAGAAAAATCCTGATAAGGAATTTACAAAAAATAGGGATCTTTTAGAAGCATATTGGGATAAGCTCTCTGCAGAAGAGGCAAAGGAAGTTATATCATTGGAAAATGTGGTGCTGGAGGAAGTTCCGGGTTCTTCAATTTTAAAATCATTGAAAACTCTTGTTCTAAACCAAAGGTTTTATTCATTTCCTCCGCATTATCTGATGGCTGGTACTGTCCTTTTGGATATTCTTCAAGCTAAATCTTCCAGCTTTCCTATATCTTCCCAAGTGTTGTTCAATATTCTTGATGAGGCCAGTGAAAAAACATTTTTATGCGGAACAGCGGAGTCAGTGCAAAGATATGTATTTGTTGGAGATGCGGGAAAGAATGGTCTTGAACTGAGAAACATAATTGCTTTCACAAGTTTCCTGCTAGAACAAAAATTGGTGAAGGCGTGGCTTACTGCCAAGGAAGCCGAAGCACTTAGGTGTCAGAAGCAATTGGTGGAGGAGGAAGAAGCTTCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAGAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACACAAAGCTGAGGCAGAAATTAACGGCTATATTGAGAGTGCTGTAAAGGCTTTATCACTGACCGAAGCATCTTTAGAAACGCCCAATTTTGAAGCTCATAATCCGAATGCATTTTCAGACAACGTAGCTTCACCTGTACCTCCCCAATATATTGACACCAATAAGGAAATAAATGAGGATACTCGTTCGGAGTATGATACTATCGCTGATCAGAATCTTGAGAGATGGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCTCATAATCCGAATGCATTTTCAGATAACGTAGCTTCACCTGTACCTCCCCAATATATTGACACCAATAAGGAAATAAATGAGGATACTCGTTCAGAGTATGATACTATCGCTGGTCAGAATCTTGAGAGATGGTCTGAAGCTAATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCCAACAATGATAACAAGGCATCAGCTATTGGTCGTGGTAGTGAAGTATGGAGTCCAAAGTCTGAAGAGGAAATTGACAAGGTGGTTTTAAAAACCACACAAGAGAAAAAACCGGACCAACTTAAGAACCAAATTTTGATAGGATCTATACCTGTTAATATTGACAATTGCAAACAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGATTCTATGGTTGAGAATGTGGGTAAGGAGAATAGTTCTTGGGATAAGCCAATGAATACTGATCCTGTCAGCCAGCATGAAACTGAAGATCAAGTTCCAGTTCAAAGTGACGAGACAGAAGTAAGCATGGGTAGTACAGAGAGAACAGCGGATATTAGAAGATTCCAGTCCTTCATCCAGGAAGCAAAAGCTTTCCTTGCAAGAAGATGGGAAGAAGCTCTGGCATCAGATCATGTGGTATTGCATATTAGCTCTGACTCGGAATCTTCATCGTCCGAAGAAACGCAGGATTCTATAGCAGATACCAAATTGCCAAACCCGGATTGA 1848 0.4053 MNTEEKDTIGGESSLHFPTPDGNSDHLLHLLYALDSQGWPLLSPLNVQLHKCDKCTREFCSPMNYRRHIRVDHRKKNPDKEFTKNRDLLEAYWDKLSAEEAKEVISLENVVLEEVPGSSILKSLKTLVLNQRFYSFPPHYLMAGTVLLDILQAKSSSFPISSQVLFNILDEASEKTFLCGTAESVQRYVFVGDAGKNGLELRNIIAFTSFLLEQKLVKAWLTAKEAEALRCQKQLVEEEEASQKRQAEILERKRQKKLRQKEQKAREQRHKAEAEINGYIESAVKALSLTEASLETPNFEAHNPNAFSDNVASPVPPQYIDTNKEINEDTRSEYDTIADQNLERWSEADDLHTDQISPLPNLEVNQKHEAHNPNAFSDNVASPVPPQYIDTNKEINEDTRSEYDTIAGQNLERWSEANDLHTDQISPLPNLEVNQKHEANNDNKASAIGRGSEVWSPKSEEEIDKVVLKTTQEKKPDQLKNQILIGSIPVNIDNCKQSEGNMVASQKDSMVENVGKENSSWDKPMNTDPVSQHETEDQVPVQSDETEVSMGSTERTADIRRFQSFIQEAKAFLARRWEEALASDHVVLHISSDSESSSSEETQDSIADTKLPNPD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2727g00012 615 MobiDBLite consensus disorder prediction 591 615 - -
Vium2727g00012 615 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 547 - -
Vium2727g00012 615 Coils Coil 221 282 - -
Vium2727g00012 615 ProSitePatterns Zinc finger C2H2 type domain signature. 52 73 IPR013087 -
Vium2727g00012 615 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 78 IPR013087 -
Vium2727g00012 615 MobiDBLite consensus disorder prediction 372 386 - -
Vium2727g00012 615 MobiDBLite consensus disorder prediction 515 557 - -
Vium2727g00012 615 MobiDBLite consensus disorder prediction 372 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2727g00012 Vium-Chr2727 146525 152647 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2727g00012 6 598 C2H2 Transcription Factor Family AT4G25610 34.572 4.68e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2727g00012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2727g00012 - - vra:106765971 1033.86