Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2727g00011 ATGAATACAGAAGAGAAAGATACGATTGGCGGAGAATCTTCCCTTCATTTTCCCACACCCGATGGCAACTCTGATCATTTGCTTCATTTACTCTATGCTTTAGATTCACAAGGTTGGCCTTTGCTCTCTCCTCTGAACGTTCAGTTGCATAAGTGTGACAAATGTACTCGAGAGTTTTGCTCCCCCATGAACTATAGAAGACATATTCGTGTAGATCATAGGAAGAAAAATCCTGATAAGGAATTTACAAAAAATAGGGATCTTTTAGAAGCATATTGGGATAAGCTCTCTGCAGAAGAGGCAAAGGAAGTTATATCATTGGAAAATGTGGTGCTGGAGGATATTCTTCAAGCTAAATCTTCCAGCTTTCCTATATCTTCCCAAGTGTTGTTCAATATTCTTGATGAGGCCAGTGAAAAAACATTTTTATGCGGAACAGCGGAGTCAGTGCAAAGATATGTATTTGTTGGAGATGCGGGAAAGAATGGTCTTGAACTGAGAAACATAATTGCTTTCACAAGTTTCCTGCTAGAACAAAAATTGGTGAAGGCGTGGCTTACTGCCAAGGAAGCCGAAGCACTTAGGTGTCAGAAGCAATTGGTGGAGGAGGAAGAAGCTTCTCAGAAAAGACAAGCTGAGATTTTGGAGAGGAAACGCCAGAAGAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACACAAAGCTGAGGCAGAAATTAACGGCTATATTGAGAGTGCTGTAAAGGCTTTATCACTGACCGAAGCATCTTTAGAAACGCCCAATTTTGAAGCTCATAATCCGAATGCATTTTCAGACAACGTAGCTTCACCTGTACCTCCCCAATATATTGACACCAATAAGGAAATAAATGAGGATACTCGTTCGGAGTATGATACTATCGCTGATCAGAATCTTGAGAGATGGTCTGAAGCTGATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCTCATAATCCGAATGCATTTTCAGATAACGTAGCTTCACCTGTACCTCCCCAATATATTGACACCAATAAGGAAATAAATGAGGATACTCGTTCAGAGTATGATACTATCGCTGGTCAGAATCTTGAGAGATGGTCTGAAGCTAATGACTTGCATACAGACCAGATTTCTCCTCTTCCAAACCTTGAAGTCAATCAGAAACATGAAGCCAACAATGATAACAAGGCATCAGCTATTGGTCGTGGTAGTGAAGTATGGAGTCCAAAGTCTGAAGAGGAAATTGACAAGGTGGTTTTAAAAACCACACAAGAGAAAAAACCGGACCAACTTAAGAACCAAATTTTGATAGGATCTATACCTGTTAATATTGACAATTGCAAACAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGATTCTATGGTTGAGAATGTGGGTAAGGAGAATAGTTCTTGGGATAAGCCAATGAATACTGATCCTGTCAGCCAGCATGAAACTGAAGATCAAGTTCCAGTTCAAAGTGACGAGACAGAAGTAAGCATGGGTAGTACAGAGAGAACAGCGGATATTAGAAGATTCCAGTCCTTCATCCAGGAAGCAAAAGCTTTCCTTGCAAGAAGATGGGAAGAAGCTCTGGCATCAGATCATGTGGTATTGCATATTAGCTCTGACTCGGAATCTTCATCGTCCGAAGAAACGCAGGATTCTATAGCAGATACCAAATTGCCAAACCCGGATTGA 1743 0.4079 MNTEEKDTIGGESSLHFPTPDGNSDHLLHLLYALDSQGWPLLSPLNVQLHKCDKCTREFCSPMNYRRHIRVDHRKKNPDKEFTKNRDLLEAYWDKLSAEEAKEVISLENVVLEDILQAKSSSFPISSQVLFNILDEASEKTFLCGTAESVQRYVFVGDAGKNGLELRNIIAFTSFLLEQKLVKAWLTAKEAEALRCQKQLVEEEEASQKRQAEILERKRQKKLRQKEQKAREQRHKAEAEINGYIESAVKALSLTEASLETPNFEAHNPNAFSDNVASPVPPQYIDTNKEINEDTRSEYDTIADQNLERWSEADDLHTDQISPLPNLEVNQKHEAHNPNAFSDNVASPVPPQYIDTNKEINEDTRSEYDTIAGQNLERWSEANDLHTDQISPLPNLEVNQKHEANNDNKASAIGRGSEVWSPKSEEEIDKVVLKTTQEKKPDQLKNQILIGSIPVNIDNCKQSEGNMVASQKDSMVENVGKENSSWDKPMNTDPVSQHETEDQVPVQSDETEVSMGSTERTADIRRFQSFIQEAKAFLARRWEEALASDHVVLHISSDSESSSSEETQDSIADTKLPNPD 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2727g00011 580 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 481 573 - -
Vium2727g00011 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 78 IPR013087 -
Vium2727g00011 580 MobiDBLite consensus disorder prediction 556 580 - -
Vium2727g00011 580 ProSitePatterns Zinc finger C2H2 type domain signature. 52 73 IPR013087 -
Vium2727g00011 580 MobiDBLite consensus disorder prediction 480 522 - -
Vium2727g00011 580 Coils Coil 186 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2727g00011 Vium-Chr2727 146525 152648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2727g00011 6 563 C2H2 Transcription Factor Family AT4G25610 32.795 1.61e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2727g00011 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2727g00011 - - vra:106765971 949.118