Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2727g00001 ATGTCAGAATCCAAGGAAGAAAATCCTGACTTTCTTCCCAAGTCAAAGCCACAGGAGGAACATGGGTTTGCCATGGATTTTGACATTGGCTTCGAAAGTCTATGGCCCTTGGATCATCTATCTTTGGTCTCCAACCCCATGTCTCCTTTTCTCTTATCCACTATCGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGAGAAGCAAATCAGAATTGCAACTGCAGGTAACACAAAAGCAGTAATTGAAAATCCAGTTGAAAATTACGACAACAAGAAATATGTGTCACCATCTCTTGTAGCCGTGCCACCTTCAGAAAATTCAGATGGCTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTATAGAACAGTGTCTCTGAGGTATATGTTTTCTGTGGATGGAGAGAATGATGAAATACTGGGACTTCCTGGTAGAGTTTTTCAGCAAAAAATTCCAGAATGGACTCCTAATGTTCAGTACTATTCTAGCAAAGAGTATCAGCGCCTAAACCATGCACAACATTACAATGTTCGTGGAACCTTGGCTCTACCTGTGTTTGAGCCTGCAGGGCAGTCATGTGTAGCTGTACTGGAGTTGATAATGACTTCACCGAAGATTAACTATGCTCCTGAGGTTGACAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTAAGGAGTTCAGAGATTTTGGAGCCTCCATACAATCAGATTTGTAATGAAGATCGCCAGCACGCATTAGCCGAGATTTTGGAGATACTGACAATTGTATGTGAGACTCATAGTTTGCCTCTAGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGTGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTATGCATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCACGAGGCTTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCTCACAACATGTGTTTCTGTGGGAACATTACTCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCTCTCATGTTTGGTTTAACCAGCTCTTTTGCAGTATGCTTACAAAGCTCTCATACAGGAAATGATGAATATGTGATAGAGTTTTTTCTTCCTCCAAGGATCACAGAATTTAATGAACAAAAGACTTTGTTGAGGTCAATATTGGCCACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGCAGAATTTTTCAATTGAAATTATAGAACCAAGAAAAGAAAGAGTTCATTTGTGGTTTGAATCAATTCCAATTACTCAATCTACTATGTCGCCACCTAGACATGCCTCCCCAAATATGGGGGAGAGGCTGCCACTGGAGCCATCTGAGCAGCAAATAACAACAGACTTTGATGACATAAATGATGGAAGGAATCTCGGTGATAATACAGATGGGCACATTGATCAGAATACTTCCTTGGAACCCAGAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCTATTAGTCTTGATGTTTTGCAACATTACTTCACTGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAACGCATCTGTAGGCAACATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTATCCAAGCTAAAGTGTGTCATTGAATCAGTCCATGGTGCTGAAGGTGCCTTTGGTTTGAACTCTCTAAGTAATGGTTCACTTCCCATTGCTGCTGGTTCCTTTTCTGAGCCCTCCACTTCAAACAAGTTCAACTGCCAAACCTCATTGACCATTAGGCCATCAGAACCTAAGATCAATGAACAAGATTTTGATGCTTCTAGAGCATCAGAAACAAACAGACAAGCTGGGTTGGAAGGTCACCTTTTAAGTACAAGGACACAAAATCCTGAGAAAGTGATTAATGAAAAAGTTGCGGCCGTTCAGGAGATTGGCACTAAAGGTACAACCAGGTTTAGAACTGGGAGTGGCTCAAGTGAAGAGAGTACAAATCCTTCTCCTCATGGTTCATGCCAAGGTAGTCCCCCAAATGAAATGTCCCCTCCAAAAGATATATTTGTAACAGGTACCAGTGAGCAATGTCTTGTTTTAAGGGGATCACTGGGGTCAACACTGCACTCAACTAGTACACCCAACCATGCAACTGCAAACCCTATGCCTAATTTTGTGGAAACCACAGAACCTCAAGAACCATTTGGAGGACAACTTCTTGAGGGTGTTGGTAGTTCTAAGGACTTGAGGAATCTATGTCGTTCAGCCGATGCTGTTTTGGAGGATCAGGTTCCAGAACCTTGCAGGATAAATCCTCAATGTTCTGATTTGGCTCCTGTGCAGCACATGGATACTAATAACATGACACCTTTCGCAGTTAGGAAAGAGTTGAAGAATGTGACCATTAAGGCAAGTTACAAAGAAGATATCATAAGGTTTAAGATCTCTTTGAACTGTGTCATTGTGGAATTAATAGAAGAAATTGCCAAAAGATTGAAACTAGAGGAGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAATGCATAGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTGCATGATATTCTGCCCATTCTTGGAAGCTCTTGTGAGAGTTCAGGAGATTGGAAAGGTTGTATATAG 2955 0.4186 MSESKEENPDFLPKSKPQEEHGFAMDFDIGFESLWPLDHLSLVSNPMSPFLLSTIEQPFSPVWAFSDVEDEKQIRIATAGNTKAVIENPVENYDNKKYVSPSLVAVPPSENSDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLRYMFSVDGENDEILGLPGRVFQQKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFEPAGQSCVAVLELIMTSPKINYAPEVDKICKALEAVNLRSSEILEPPYNQICNEDRQHALAEILEILTIVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSSFAVCLQSSHTGNDEYVIEFFLPPRITEFNEQKTLLRSILATMKPHFQSLKIAAGVELEQNFSIEIIEPRKERVHLWFESIPITQSTMSPPRHASPNMGERLPLEPSEQQITTDFDDINDGRNLGDNTDGHIDQNTSLEPRTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSNGSLPIAAGSFSEPSTSNKFNCQTSLTIRPSEPKINEQDFDASRASETNRQAGLEGHLLSTRTQNPEKVINEKVAAVQEIGTKGTTRFRTGSGSSEESTNPSPHGSCQGSPPNEMSPPKDIFVTGTSEQCLVLRGSLGSTLHSTSTPNHATANPMPNFVETTEPQEPFGGQLLEGVGSSKDLRNLCRSADAVLEDQVPEPCRINPQCSDLAPVQHMDTNNMTPFAVRKELKNVTIKASYKEDIIRFKISLNCVIVELIEEIAKRLKLEEGTFDIKYLDDDHEWVLIACDADLQECIDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGCI 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2727g00001 984 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Vium2727g00001 984 MobiDBLite consensus disorder prediction 697 716 - -
Vium2727g00001 984 MobiDBLite consensus disorder prediction 735 765 - -
Vium2727g00001 984 MobiDBLite consensus disorder prediction 556 575 - -
Vium2727g00001 984 MobiDBLite consensus disorder prediction 685 716 - -
Vium2727g00001 984 Pfam RWP-RK domain 578 625 IPR003035 -
Vium2727g00001 984 ProSiteProfiles PB1 domain profile. 884 966 IPR000270 GO:0005515
Vium2727g00001 984 SUPERFAMILY CAD & PB1 domains 884 969 - -
Vium2727g00001 984 Pfam PB1 domain 885 965 IPR000270 GO:0005515
Vium2727g00001 984 CDD PB1_NLP 885 965 IPR034891 -
Vium2727g00001 984 Gene3D - 882 968 - -
Vium2727g00001 984 MobiDBLite consensus disorder prediction 534 575 - -
Vium2727g00001 984 SMART PB1_new 884 966 IPR000270 GO:0005515
Vium2727g00001 984 MobiDBLite consensus disorder prediction 732 773 - -
Vium2727g00001 984 PANTHER PROTEIN NLP8 56 978 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2727g00001 Vium-Chr2727 72543 77615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2727g00001 883 984 NLP Transcription Factor Family AT1G64530 57.282 1.64e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vium2727g00001 PB1 3e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2727g00001 - - gmx:100780901 1697.18