Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2725g00003 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGGAAATATGTCCGTTACACACCTGAGCAGGTTGAGGCCCTTGAGAGACTTTATCATGACTGCCCCAAACCCAGTTCCATACGCCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATTGAGCCTAAGCAAATCAAAGTCTGGTTTCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCCTCGCGGTTGCAAGCTGTAAATAGGAAGCTCACAGCCATGAACAAGCTTCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCATTTGGTTTACGAAAATGGCTACTTTCGCCAACACACTCAGAATACTGCGCTTCCAACCAAAGACACGAGCTGTGAGTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGTATCCCCCTAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGCCTTGTCGGTTTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACGTTGGCACCTGCCCGTGACTTCTGGTTGTTGCGCTACACTTCTGTTTTAGAAGATGGGAGCCTAGTAGTATGTGAGAGGTCCCTTAAAAATACACAAAATGGTCCAACCATGCCTCCCGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCTAGTGGGTACCTTATAAGACCCTGTGAGGGAGGTGGTTCTATCATTCACATTGTTGATCACATGGATTTGGAGCCGTGGAGCGTTCCTGAAGTTCTGCGACCACTGTATGAATCATCAACAGTGTTGGCTCAGAAGACAACTATGGTGGCACTACGTCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTGACCGGGTGGGGGAGACGACCTGCAGCTCTTCGAGCACTTGGCCAGAGACTCAGCCGTGGCTTCAATGAAGCAATCAATGGGTTCACTGATGAGGGATGGTCAATGATCGGCAATGATGGTGTTGATGATGTTACAGTTCTAGTGAATTCATCACCTGACAAGTTAATGGGTTTGAATCTTTCCTTTGCCAATGGATTTCCATCTATCAGCAATGCAGTCTTGTGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGCCATATTACTCAGGTTCCTTCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTATTCGGCTGCTGCCGTTAAAGTCGGTCCTTGTGGTTTACCAGGAACTCGTGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACCATTGAGCATGAGGAGTTTCTTGAAGTTATTAAGTTGGAAGGAATTGCTCATTCTCCTGAAGATGCAATAATGCCCAGAGAAGTATTTCTTTTGCAACTGTGCAGCGGAATGGATGAAAATGCTGTTGGAACCTGTGCAGAGCTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATCATCCCTCTTGATTCTGCAAAGGAAGCATCCAATCCAAATCGCACACTTGACCTGGCATCTGCTCTAGACATTGGCCCAACTGGAAACAGAGCATCAAATGATTATTCTGGAAATTCTGGATCTATGAGATCTGTGATGACAATAGCGTTTGAATTTGCCTTTGAAAGTCATATGCAAGATCATGTAGCATCCATGGCACGCCAGTATGTTCGAAGCATTATATCATCTGTCCAAAGGGTAGCATTAGCACTCTCTCCTTCTCATTTAAGTTCACAAGCTGGGCTAAGAACACCACTGGGTACCCCTGAAGCGCAAACACTAGCTCGCTGGATCTGCAATAGTTATAGATGCTACTTGGGGGTCGAGCTACTTAAATCCAATAACGAAGGGAACGAATCTTTGCTCAATTCCTTGTGGCATCACTCAGATGCAATATTATGCTGCACTCTAAAGGCATTGCCTGTCTTCACTTTCGCCAACCAGGCAGGGCTTGACATGCTGGAGACCACCTTAGTTGCTTTGCAAGATATAACATTGGAGAAGATATTCGATGATCATGGCCGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCCATCTCATATGAAAGAGTAGTAGCTTGGAAGGTGTTGAATGAAGAAGAGATTGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTCGTTTGA 2514 0.4638 MAMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTAQYPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAINGFTDEGWSMIGNDGVDDVTVLVNSSPDKLMGLNLSFANGFPSISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAVKVGPCGLPGTRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDAIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKEASNPNRTLDLASALDIGPTGNRASNDYSGNSGSMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLNSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEEIAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2725g00003 837 CDD bZIP 68 107 - -
Vium2725g00003 837 SMART START_1 159 369 IPR002913 GO:0008289
Vium2725g00003 837 FunFam homeobox-leucine zipper protein ATHB-15 195 376 - -
Vium2725g00003 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Vium2725g00003 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 837 IPR044830 GO:0003700
Vium2725g00003 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Vium2725g00003 837 Coils Coil 71 105 - -
Vium2725g00003 837 SUPERFAMILY Bet v1-like 159 348 - -
Vium2725g00003 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Vium2725g00003 837 Gene3D - 194 372 IPR023393 -
Vium2725g00003 837 Pfam START domain 160 368 IPR002913 GO:0008289
Vium2725g00003 837 CDD START_ArGLABRA2_like 154 369 - -
Vium2725g00003 837 FunFam Homeobox-leucine zipper protein REVOLUTA 16 71 - -
Vium2725g00003 837 Pfam MEKHLA domain 694 836 IPR013978 -
Vium2725g00003 837 Gene3D - 12 82 - -
Vium2725g00003 837 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Vium2725g00003 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Vium2725g00003 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2725g00003 Vium-Chr2725 7720 14958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2725g00003 1 789 Homeobox Transcription Factor Family AT1G52150 86.742 0.0 1427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium2725g00003 START 2.8e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2725g00003 K09338 - zju:107428556 1587.01