Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2724g00021 ATGGCTGACACCGCCGGCTCCGGTCACCGGCGGGTTATCACGCTCATCTCTTCCCTTATCTCCCTCTCTCTCTCCATCAGAGTCTTCGCCGGAAAGTGGCAACTTATTCGGAGTAGGCTGGAGGAGCTCTGTTCGGCATTCGTTGCCGGCGACTCCACTTCACTGTCAAGCGAGATCCCGGAGGTAACAGGCACGGTGGAGGAGTGCCACGAGCTGGCAAGGCGGTGCTTGGATCTGTCCTACAGCGGGAAGCTCTTGATGCAGAGCGACTTAGACGTGACTTTGGGGAAGTTGGAAGCGCACGTGAAGAAGCTATCCGAGATATTCAAGAAGCGTGTGTCGATGCATGGCTACGCTGTTGTGGTTTCAAGGCCTGGTTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGATTTAATGACTCGAATGAAGGTTGGTGATTTGGGTATCAGGAAGCAAGCGTTGATTAACCTGCATGAAGTTGTTGTGGAGGATGATAAGTATGTGAAATTGGTTGTTGAGGCTTCTGAGTTTGTTCACTTGTTGGTGGATTTTCTGGGTTGTGATGAGGTTGAGATTGTTGAGGAGGCTGCCAAGGTTGTTTCTTTCGTTGCGGGTTTTGATTATTATAAAGGGGTTTTGGTTGGTGCTGGAGTTATTGGTCCTTTAATTCGGATTTTGGAATGTGGGAGTGAAATGGGAAAGATTGCTGCTGTGAGATGTTTGTGTAGACTGACTGAGAATTCGGATAATGCTTGGAGTGTTTCAGCTCATGGAGGTGTAACAGTCTTGTTGAGGATTTGTGAGAGCGGAGAGTGTAAAGGAGAATTGATTGGTCCTGCTTGTGGGGTGTTGCGGAATCTTTGTGGGGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACGTTTGTGAAGCTTGTGAGGTCTAAGGATGAAGTAGTTCAAGTTAGTTCTATCGAGTTGATTCAAAACATTGCCTCTGGTGATGAGTTGGTTAGGCAGATGGTGGTTAGAGAAGGAGGGGTTCGTGTTCTTCTGCGTGTTTTGGATCCATTGTGGACGTGCTCGTCTAAATCAAGAGAGGTTGTGATGAGGGCTATTGAGAATTTGTGTTTTTCTTCGTCCAGTTGTGTTAATCTTTTGCTGAGTTATGGCTTTGTGGATCAGTTGATGTATTATGTTCGAAATGGGGAGGTATCGATTCAGGAGTTGGGGTTGAAGGTAGCGTTTAGATTGTGTGAAGCATCGGAGGAGGCCAAGAAGGCATTAGGTGATGCCGGCTTCATGGCCGAGCTTGTGAAGTTTCTAAATGCGGAATCGTTTGAAGTTCGTGAAATGGCAGCAGAGGCACTCTCTGGCATGGTTACGGTGGCTAAAAATAGGAAGAGGTTTGTGCAGGATGACCAAAACATTACCCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGAAATTCTGGTAATAAAAAGTTGTTGATCTCTATCTTGATGTCACTAACAAGCTGCAACAGTGGCAGGAAGAAAATTGTGAGTTCCGGGTATGCCAAAAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCCGATGCCAAGAGGCTCGTCAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1674 0.4719 MADTAGSGHRRVITLISSLISLSLSIRVFAGKWQLIRSRLEELCSAFVAGDSTSLSSEIPEVTGTVEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKRVSMHGYAVVVSRPGFGACKDDMRFYLRDLMTRMKVGDLGIRKQALINLHEVVVEDDKYVKLVVEASEFVHLLVDFLGCDEVEIVEEAAKVVSFVAGFDYYKGVLVGAGVIGPLIRILECGSEMGKIAAVRCLCRLTENSDNAWSVSAHGGVTVLLRICESGECKGELIGPACGVLRNLCGVEEIKRFMVEEGVVSTFVKLVRSKDEVVQVSSIELIQNIASGDELVRQMVVREGGVRVLLRVLDPLWTCSSKSREVVMRAIENLCFSSSSCVNLLLSYGFVDQLMYYVRNGEVSIQELGLKVAFRLCEASEEAKKALGDAGFMAELVKFLNAESFEVREMAAEALSGMVTVAKNRKRFVQDDQNITLLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2724g00021 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 305 IPR000225 GO:0005515
Vium2724g00021 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 347 IPR000225 GO:0005515
Vium2724g00021 557 Gene3D - 138 546 IPR011989 -
Vium2724g00021 557 SMART arm_5 209 249 IPR000225 GO:0005515
Vium2724g00021 557 SMART arm_5 250 292 IPR000225 GO:0005515
Vium2724g00021 557 SMART arm_5 167 208 IPR000225 GO:0005515
Vium2724g00021 557 SMART arm_5 335 378 IPR000225 GO:0005515
Vium2724g00021 557 SMART arm_5 422 462 IPR000225 GO:0005515
Vium2724g00021 557 SMART arm_5 293 333 IPR000225 GO:0005515
Vium2724g00021 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 556 - -
Vium2724g00021 557 SUPERFAMILY ARM repeat 139 538 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2724g00021 Vium-Chr2724 95502 97553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2724g00021 109 409 U-box Gene Family AT2G23140 24.092 1.70e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2724g00021 - - gmx:100783537 940.643