Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2724g00013 ATGGGGAAAAAATCGACGCCGGAAGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCATATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTTGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGCTGAGAAGAAGAAAAAGAAGGAATCGCAATTGAATTTGCCTTTGAAATTGAATTTGCACTCCAATCACGACTTGAGGAGGGAGTTGCCGAATGGGGTTATGGCTATTGCTTCCTCTTCAACGCCCAATGTGGCTTCTTCTTATCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGGTGGCAAATTGCAGGTTGTGCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCACCTCAATATGAAGACAGTGAAAGTAAGGAGCATTTAGCTGGTAGAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAAAATGAATGATATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCATTGCAAAACACCCATTTTGGATCTTCATAAAGGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCGCGCATTAAGTCAAAGAAGAATCTCTGAACAAAACAACTCTTCCATATCCAAGCAACCTGACAGGATAAGTGCTTGCACTTCTGGCAAAAGGTACCTATTGGATGAGAAGGCCATTTCTCATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAACGGTGCTTCCATAGTATCATGCCCAACTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTAAACTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCAACAAAGATCATAAAACTAGCAGATACAAACAGCTACCGGAAGCAGCTCAAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACCGGATCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATCGATGCACTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTTTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAATGCACGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTCAAAAGGTGTCATCTAAAACTACTACTGACCACGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGATTTTTTAAGGAGAGTCAACAGAACATCTTGCATCTCTTGTGAAGCGAAAACAATATGCAATCAGAATTTAGACAACAATATTTCCGGTGATAAAGAATGTGGTTCCTATTCTGAAACTGAAAAGGCACATCGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAGATGTTTCCAGATCATAATCCTAGAAATTCCGTTGAAAACTCAGACAATGATAAAAGGAAGAAGGCTACAGGGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATACCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTCTTTCTTGACAATACGCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAGTTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTGTATCCAATTGATTGATGAGGCCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTTCATAGCATGAATACAGCAATAAAAGAAATATGTGAACTTACATGCAGAACATGA 2883 0.4142 MGKKSTPEEEGKAVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETHIGAKRKGNSREAFVNRRNQLELIRMVLQREAEKKKKKESQLNLPLKLNLHSNHDLRRELPNGVMAIASSSTPNVASSYRYFRSKNVERGSGGKLQVVQCGRNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLAPQYEDSESKEHLAGRNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKKMNDIIIKPVKFGCNEKNYCNHCKTPILDLHKGCLSCSYSLCLSCSRALSQRRISEQNNSSISKQPDRISACTSGKRYLLDEKAISHGNLTDTSMLTEWTSCNGASIVSCPTTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIICSYDFPETLDKSSSCPMCVNKDHKTSRYKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPQGSTMHDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQKVSSKTTTDHAEDREQNEMQSLVREGTDFLRRVNRTSCISCEAKTICNQNLDNNISGDKECGSYSETEKAHRSLSFHSIVLSSEMFPDHNPRNSVENSDNDKRKKATGNAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEHHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAECIQLIDEARLLPEDHPAKVEKLEVKKMALHSMNTAIKEICELTCRT 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2724g00013 960 Gene3D Cupin 492 931 - -
Vium2724g00013 960 MobiDBLite consensus disorder prediction 784 808 - -
Vium2724g00013 960 ProSiteProfiles Zinc finger RING-type profile. 186 232 IPR001841 -
Vium2724g00013 960 MobiDBLite consensus disorder prediction 793 807 - -
Vium2724g00013 960 Pfam JmjC domain, hydroxylase 810 906 IPR003347 -
Vium2724g00013 960 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vium2724g00013 960 Coils Coil 92 112 - -
Vium2724g00013 960 SMART cupin_9 600 923 IPR003347 -
Vium2724g00013 960 ProSiteProfiles JmjC domain profile. 619 923 IPR003347 -
Vium2724g00013 960 Pfam WRC 15 56 IPR014977 -
Vium2724g00013 960 SUPERFAMILY Clavaminate synthase-like 499 945 - -
Vium2724g00013 960 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 957 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2724g00013 Vium-Chr2724 43903 50939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2724g00013 11 54 GRF Transcription Factor Family AT2G22840 47.727 1.30e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium2724g00013 JmjC 2.8e-09 CL0029