Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2724g00012 ATGGGGAAAAAATCGACGCCGGAAGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCATATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTTGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGCTGAGAAGAAGAAAAAGAAGGAATCGCAATTGAATTTGCCTTTGAAATTGAATTTGCACTCCAATCACGACTTGAGGAGGGAGTTGCCGAATGGGGTTATGGCTATTGCTTCCTCTTCAACGCCCAATGTGGCTTCTTCTTATCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGGTGGCAAATTGCAGGTTGTGCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCACCTCAATATGAAGACAGTGAAAGTAAGGAGCATTTAGCTGGTAGAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAAAATGAATGATATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCATTGCAAAACACCCATTTTGGATCTTCATAAAGGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCGCGCATTAAGTCAAAGAAGAATCTCTGAACAAAACAACTCTTCCATATCCAAGCAACCTGACAGGATAAGTGCTTGCACTTCTGGCAAAAGGTACCTATTGGATGAGAAGGCCATTTCTCATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAACGGTGCTTCCATAGTATCATGCCCAACTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTAAACTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCAACAAAGATCATAAAACTAGCAGATACAAACAGCTACCGGAAGCAGCTCAAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACCGGATCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATCGATGCACTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTTTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAATGCACGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTCAAAAGGTGTCATCTAAAACTACTACTGACCACGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGATTTTTTAAGGAGAGTCAACAGAACATCTTGCATCTCTTGTGAAGCGAAAACAATATGCAATCAGAATTTAGACAACAATATTTCCGGTGATAAAGAATGTGGTTCCTATTCTGAAACTGAAAAGGCACATCGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAGATGTTTCCAGATCATAATCCTAGAAATTCCGTTGAAAACTCAGACAATGATAAAAGGAAGAAGGCTACAGGGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATACCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTCTTTCTTGACAATACGCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAGTTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTGTATCCAATTGATTGATGAGGCCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTAGTCTTCGTAATAATACTTTTATTTAGCAATTTAGCCTTTGTCCTGTTAGATGTTTGCCCTGAATTCACAAGGCCTGTTTCTGTTTTTGGTTTATGA 2910 0.4137 MGKKSTPEEEGKAVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETHIGAKRKGNSREAFVNRRNQLELIRMVLQREAEKKKKKESQLNLPLKLNLHSNHDLRRELPNGVMAIASSSTPNVASSYRYFRSKNVERGSGGKLQVVQCGRNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLAPQYEDSESKEHLAGRNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKKMNDIIIKPVKFGCNEKNYCNHCKTPILDLHKGCLSCSYSLCLSCSRALSQRRISEQNNSSISKQPDRISACTSGKRYLLDEKAISHGNLTDTSMLTEWTSCNGASIVSCPTTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIICSYDFPETLDKSSSCPMCVNKDHKTSRYKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPQGSTMHDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQKVSSKTTTDHAEDREQNEMQSLVREGTDFLRRVNRTSCISCEAKTICNQNLDNNISGDKECGSYSETEKAHRSLSFHSIVLSSEMFPDHNPRNSVENSDNDKRKKATGNAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEHHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAECIQLIDEARLLPEDHPAKVEKLEVVFVIILLFSNLAFVLLDVCPEFTRPVSVFGL 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2724g00012 969 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 943 IPR045109 GO:0032454|GO:0033169
Vium2724g00012 969 MobiDBLite consensus disorder prediction 784 808 - -
Vium2724g00012 969 SUPERFAMILY Clavaminate synthase-like 499 927 - -
Vium2724g00012 969 ProSiteProfiles Zinc finger RING-type profile. 186 232 IPR001841 -
Vium2724g00012 969 MobiDBLite consensus disorder prediction 793 807 - -
Vium2724g00012 969 Pfam JmjC domain, hydroxylase 810 906 IPR003347 -
Vium2724g00012 969 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vium2724g00012 969 Coils Coil 92 112 - -
Vium2724g00012 969 Pfam WRC 15 56 IPR014977 -
Vium2724g00012 969 Gene3D Cupin 492 931 - -
Vium2724g00012 969 SMART cupin_9 600 923 IPR003347 -
Vium2724g00012 969 ProSiteProfiles JmjC domain profile. 619 923 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2724g00012 Vium-Chr2724 43903 50941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2724g00012 11 54 GRF Transcription Factor Family AT2G22840 47.727 1.07e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium2724g00012 JmjC 2.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2724g00012 K15601 - gmx:100802129 1563.9