Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2724g00011 ATGGGGAAAAAATCGACGCCGGAAGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGACGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCATATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTTGTCAATAGGAGGAACCAATTGGAGCTCATAAGGATGGTTCTGCAGAGAGAGGCTGAGAAGAAGAAAAAGAAGGAATCGCAATTGAATTTGCCTTTGAAATTGAATTTGCACTCCAATCACGACTTGAGGAGGGAGTTGCCGAATGGGGTTATGGCTATTGCTTCCTCTTCAACGCCCAATGTGGCTTCTTCTTATCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGGTGGCAAATTGCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCACCTCAATATGAAGACAGTGAAAGTAAGGAGCATTTAGCTGGTAGAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAAAATGAATGATATTATCATCAAACCAGTCAAGTTTGGCTGCAATGAGAAAAATTACTGCAATCATTGCAAAACACCCATTTTGGATCTTCATAAAGGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCGCGCATTAAGTCAAAGAAGAATCTCTGAACAAAACAACTCTTCCATATCCAAGCAACCTGACAGGATAAGTGCTTGCACTTCTGGCAAAAGGTACCTATTGGATGAGAAGGCCATTTCTCATGGCAATTTAACTGATACCTCAATGTTAACTGAGTGGACAAGTTGTAACGGTGCTTCCATAGTATCATGCCCAACTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTAAACTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAAGTTCAAGTTGCCCAATGTGTGTCAACAAAGATCATAAAACTAGCAGATACAAACAGCTACCGGAAGCAGCTCAAAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACTAACGTTAGGCAGTATTTTACCGGATCTCTTAAATGTCAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATCGATGCACTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTTTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAATGCACGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGACATCCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTCAAAAGGTGTCATCTAAAACTACTACTGACCACGCAGAAGACAGGGAACAAAATGAAATGCAAAGTTTGGTAAGAGAAGGAACTGATTTTTTAAGGAGAGTCAACAGAACATCTTGCATCTCTTGTGAAGCGAAAACAATATGCAATCAGAATTTAGACAACAATATTTCCGGTGATAAAGAATGTGGTTCCTATTCTGAAACTGAAAAGGCACATCGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAGATGTTTCCAGATCATAATCCTAGAAATTCCGTTGAAAACTCAGACAATGATAAAAGGAAGAAGGCTACAGGGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATACCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTCTTTCTTGACAATACGCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAGTTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTGTATCCAATTGATTGATGAGGCCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTAGTCTTCGTAATAATACTTTTATTTAGCAATTTAGCCTTTGTCCTGTTAGATGTTTGCCCTGAATTCACAAGGCCTGTTTCTGTTTTTGGTTTATGA 2901 0.4133 MGKKSTPEEEGKAVPEHLRCNRTDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETHIGAKRKGNSREAFVNRRNQLELIRMVLQREAEKKKKKESQLNLPLKLNLHSNHDLRRELPNGVMAIASSSTPNVASSYRYFRSKNVERGSGGKLQCGRNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLAPQYEDSESKEHLAGRNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKKMNDIIIKPVKFGCNEKNYCNHCKTPILDLHKGCLSCSYSLCLSCSRALSQRRISEQNNSSISKQPDRISACTSGKRYLLDEKAISHGNLTDTSMLTEWTSCNGASIVSCPTTKLGDCGNSHLDLNYVFPLSWIKEMEAKAEEIICSYDFPETLDKSSSCPMCVNKDHKTSRYKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCQPKKNTWHEMLKLKGWLSSQLFKEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPQGSTMHDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMDIPLSTDQLSRISKLLKKHKVLCQKVSSKTTTDHAEDREQNEMQSLVREGTDFLRRVNRTSCISCEAKTICNQNLDNNISGDKECGSYSETEKAHRSLSFHSIVLSSEMFPDHNPRNSVENSDNDKRKKATGNAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEHHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAECIQLIDEARLLPEDHPAKVEKLEVVFVIILLFSNLAFVLLDVCPEFTRPVSVFGL 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2724g00011 966 Gene3D Cupin 489 928 - -
Vium2724g00011 966 Pfam JmjC domain, hydroxylase 807 903 IPR003347 -
Vium2724g00011 966 SMART cupin_9 597 920 IPR003347 -
Vium2724g00011 966 SUPERFAMILY Clavaminate synthase-like 496 924 - -
Vium2724g00011 966 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Vium2724g00011 966 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 940 IPR045109 GO:0032454|GO:0033169
Vium2724g00011 966 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vium2724g00011 966 Coils Coil 92 112 - -
Vium2724g00011 966 MobiDBLite consensus disorder prediction 781 805 - -
Vium2724g00011 966 MobiDBLite consensus disorder prediction 790 804 - -
Vium2724g00011 966 ProSiteProfiles JmjC domain profile. 616 920 IPR003347 -
Vium2724g00011 966 Pfam WRC 15 56 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2724g00011 Vium-Chr2724 43903 50942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2724g00011 11 54 GRF Transcription Factor Family AT2G22840 47.727 1.14e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium2724g00011 JmjC 2.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2724g00011 K15601 - gmx:100799234 1557.73