Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2724g00004 ATGGAGTTTGATCTTGAAGACCCACTAGTCAGCTTGGAAGAAGAGCAACCCTTTACTGTATCAGAACTCTTTGCCTCCGAATCAGATCACATGCCCTCACCAAACTACTTAAGTCTAACACATTTTCACGTTTTCTGTTTTGAGGCCATATCTCTTATTCTTCAGGTTCAGCTTTCTTACAAACTAGACCCTTTTGTAGCTTACCTTGCTATAAATTACATGCACCGTTTCACGTCAAGCCAGGAAATTCCGAAGGGGAATCCGTGGTATCTTAGGCTTGTTGTCGTATCGTGTCTCTCTCTTGCTTCAAAGATGAAAAACACAACTTTGCCATTTTTGGAAATGCAGAAAGAAGGTTGTAACTTTAAGGTTCAAAGTATTCAGAGAATGGAGCCTCTGATTCTCGGGGCACTGAAATGGCGTATGAGGTCAATTACACCTTTTTCTTTCCTGCGCTTCTTCATCTCTTTAGCTGAAATTGAAGACCACTCACTGAAGCAAGCACTCAAAGAGAGAGCTTCTGCTATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAGCCTTCAACTATTGCAGCAACTGCCCTCATCATTGCATCGCATGAACTACTCCCTCATCAATATTCTATTCTGAGAGCTTCAATTATATCCAGTGAGTACCTAGATGAGGAGACATTGTCCAAGTGCTTTGATTTGATGCAAGAGATGATAAGAACGGTAGCAAAAGAGTTAGAGACAGAAAGATGCTTTTTAAGAACAGAAACTCCTGGGAGTGTGCTTGAGAGAAACACCAAACGACAAAGAATTTAA 819 0.4029 MEFDLEDPLVSLEEEQPFTVSELFASESDHMPSPNYLSLTHFHVFCFEAISLILQVQLSYKLDPFVAYLAINYMHRFTSSQEIPKGNPWYLRLVVVSCLSLASKMKNTTLPFLEMQKEGCNFKVQSIQRMEPLILGALKWRMRSITPFSFLRFFISLAEIEDHSLKQALKERASAIIFNAQNDIKLLEYKPSTIAATALIIASHELLPHQYSILRASIISSEYLDEETLSKCFDLMQEMIRTVAKELETERCFLRTETPGSVLERNTKRQRI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2724g00004 272 Gene3D - 33 143 - -
Vium2724g00004 272 FunFam D6-type cyclin 34 140 - -
Vium2724g00004 272 Gene3D - 22 234 - -
Vium2724g00004 272 CDD CYCLIN_AtCycD-like_rpt2 145 236 - -
Vium2724g00004 272 SUPERFAMILY Cyclin-like 126 249 IPR036915 -
Vium2724g00004 272 SMART Cyclin_C_2 145 260 IPR004367 -
Vium2724g00004 272 SMART cyclin_7 51 136 IPR013763 -
Vium2724g00004 272 SMART cyclin_7 152 238 IPR013763 -
Vium2724g00004 272 PANTHER CYCLINS 50 241 IPR039361 -
Vium2724g00004 272 Pfam Cyclin, C-terminal domain 145 241 IPR004367 -
Vium2724g00004 272 Pfam Cyclin, N-terminal domain 24 142 IPR006671 -
Vium2724g00004 272 SUPERFAMILY Cyclin-like 20 142 IPR036915 -
Vium2724g00004 272 FunFam D6-type cyclin 141 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2724g00004 Vium-Chr2724 14890 16732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2724g00004 1 265 Core Cell Cycle Gene Families AT4G03270 39.643 9.66e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2724g00004 K18812 - gmx:100799985 431.409