Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2724g00003 ATGGAGTTTGATCTTGAAGACCCACTAGTCAGCTTGGAAGAAGAGCAACCCTTTACTGTATCAGAACTCTTTGCCTCCGAATCAGATCACATGCCCTCACCAAACTACTTAAGTCTAACACATTTTCACGTTTTCTGTTTTGAGGCCATATCTCTTATTCTTCAGGTGAAGTTATGTTTATGTAATAGGTTCATTTCCCCCTCCTTCGTGTCACATTTGCTACATTTTGTTATGTTTCTTCAGGTTCAGCTTTCTTACAAACTAGACCCTTTTGTAGCTTACCTTGCTATAAATTACATGCACCGTTTCACGTCAAGCCAGGAAATTCCGAAGGGGAATCCGTGGTATCTTAGGCTTGTTGTCGTATCGTGTCTCTCTCTTGCTTCAAAGATGAAAAACACAACTTTGCCATTTTTGGAAATGCAGAAAGAAGGTTGTAACTTTAAGGTTCAAAGTATTCAGAGAATGGAGCCTCTGATTCTCGGGGCACTGAAATGGCGTATGAGGTCAATTACACCTTTTTCTTTCCTGCGCTTCTTCATCTCTTTAGCTGAAATTGAAGACCACTCACTGAAGCAAGCACTCAAAGAGAGAGCTTCTGCTATAATCTTCAATGCTCAAAATGACATTAAGCTTTTAGAGTATAAGCCTTCAACTATTGCAGCAACTGCCCTCATCATTGCATCGCATGAACTACTCCCTCATCAATATTCTATTCTGAGAGCTTCAATTATATCCAGTGAGTACCTAGATGAGGAGACATTGTCCAAGTGCTTTGATTTGATGCAAGAGATGATAAGAACGGTAGCAAAAGAGTTAGAGACAGAAAGATGCTTTTTAAGAACAGAAACTCCTGGGAGTGTGCTTGAGAGAAACACCAAACGACAAAGAATTTAA 897 0.3991 MEFDLEDPLVSLEEEQPFTVSELFASESDHMPSPNYLSLTHFHVFCFEAISLILQVKLCLCNRFISPSFVSHLLHFVMFLQVQLSYKLDPFVAYLAINYMHRFTSSQEIPKGNPWYLRLVVVSCLSLASKMKNTTLPFLEMQKEGCNFKVQSIQRMEPLILGALKWRMRSITPFSFLRFFISLAEIEDHSLKQALKERASAIIFNAQNDIKLLEYKPSTIAATALIIASHELLPHQYSILRASIISSEYLDEETLSKCFDLMQEMIRTVAKELETERCFLRTETPGSVLERNTKRQRI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2724g00003 298 CDD CYCLIN_AtCycD-like_rpt2 171 262 - -
Vium2724g00003 298 SMART Cyclin_C_2 171 286 IPR004367 -
Vium2724g00003 298 Gene3D - 62 163 - -
Vium2724g00003 298 PANTHER CYCLINS 73 267 IPR039361 -
Vium2724g00003 298 Pfam Cyclin, N-terminal domain 73 168 IPR006671 -
Vium2724g00003 298 Pfam Cyclin, C-terminal domain 171 267 IPR004367 -
Vium2724g00003 298 SUPERFAMILY Cyclin-like 23 168 IPR036915 -
Vium2724g00003 298 FunFam D6-type cyclin 59 166 - -
Vium2724g00003 298 FunFam D6-type cyclin 167 260 - -
Vium2724g00003 298 SMART cyclin_7 178 264 IPR013763 -
Vium2724g00003 298 SMART cyclin_7 77 162 IPR013763 -
Vium2724g00003 298 SUPERFAMILY Cyclin-like 152 274 IPR036915 -
Vium2724g00003 298 Gene3D - 164 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2724g00003 Vium-Chr2724 14890 16736 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2724g00003 1 291 Core Cell Cycle Gene Families AT4G03270 37.954 1.20e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2724g00003 K18812 - gmx:100799985 417.157