Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2723g00003 ATGCCTCCGAGGGTAGTGAAGAGAGGCGCTGCAGCGAAGAGGGCGTCGAGAGGATCCTCGAAGGCTGCACCTGATAACCAGCGTGAGCCAGAAACTGCTGAAGTGGAGGCCAAAAATCATGCAGAAAATTCAGCTGTTGATGTTGGAATGGAAGAAAAACACTTTGACGTGGACCAAGAGCTTCCGGAAGCCCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAAGCAGAGGATTATGGTGGTGTTGACTATGATGAAAAGGAAATTGAACAAGATGAAGGTCAGGATGAGGCAGATGAAGTAGAGGAAGAACCTGAAGAGATTATAGGTGACGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGACGATGATGGTGAACATGCTGGTGAGGAGCATGAGCATGATGAGCATGCCCAGGTGCCTGACGTGGAGGAAGAGGAACACCGCGAAGTTGTAAAGGAGAGGCGAAAGCGTAAGGAATTTGAAGTATTTGTGGGGGGACTAGATAAGAATGCTACCGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAGAAGAAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCTGTGGTGGAGCTAAAAAATCCAGTGATTAATGGTAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACTTGGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTAAAACATTATGGAGTAGAAAATGTGGAGGATTTGACTTTAGTAGAAGATGATACCAATGAGGGGATGAACCGAGGATTTGCATTTTTAGAGTTTTCATCTCGTTCAGATGCTAAGGAAGCCTACAGGAGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCTGCGAAGGTTTCCTTTGCTGATTCCTTTATTGATCTGGGTGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCGTCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTAGGAACATGCCAGCTGCACGCAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATAACTAGTGCAGGGTTAGGTGAAGGTGACAGAAAGGCAAAAGTTAGGGCAAGATTATCACGGCCCCTTTCCAAACCTCTTCAGAGAGGCCGTGGGAAACACAATAACCATGGGACAGACTTTCGTTCTGGTCGCAACTCTGGAAGATTGGCAAGACCTTCACGGGGTCGACCTGCTCCATCTAGTTATCCTACCCGTGTGGTTAGAGGCATTGGAAGTCGTGCTCCACCAGTTAGACCTGTTAGTGTTAGAAGTAGACGTCCTGTCACATCCATGCTAGAAAGAGACAGGCCAGTTGCTCCTCCAGCTAGAACCTTTGAAAGGAGATTGACTGCTCCTGCATATTCAAAAAGTGGCATGAAAAGAGACTATAGTCGACGTGAGGATCTACCGCCTCCAAGAAGCAGAGTTGCTGCAGATTATGGCTCTAGGATAGCATCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGTGGTTCTGACTACCCTGAGCTACATAGAAGTAGTTCTCGTGCTGCACCAAAGAGGGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCCCATCTAAGTTATCGAGAAGGACGACCCCGTGACTATGAAACTATAGCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTCCTCCACGGTATGATACTGGTGCTCGCCAATCAAGATCCCGTTTAGATTATGAATACGGAAGTAGTGCTTCACAATATGGAGATGCTTATCGTGATAGACTTGGAAGGTCTAGTCTGGGATATAGTGGCAGCAGAACTTCCATTTCTAGTCAAGAATTACATGGGACGTATGGCAGTCGACAGGGCATAAGTTATGGTGGAGGTTCTTTTGGTGGTAGTGATGGTGGTATGTACACATCAAGTTATGGTGGTGAATACGAATCTCGTGGAAGTGATGTTGGGGGCCGCTCATATTCGTCCATGTACTCTGGTAGAGGTGTGGGTGGTGGTAGCAGCAGCTATATGGGTGGTGGTGGCGGCTCTGGGTCTTATTATTGA 2343 0.4507 MPPRVVKRGAAAKRASRGSSKAAPDNQREPETAEVEAKNHAENSAVDVGMEEKHFDVDQELPEAPNGSAKVENNEEEVKESIDEYEKGEHLDLEDNYPEYEAEDYGGVDYDEKEIEQDEGQDEADEVEEEPEEIIGDEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHEHDEHAQVPDVEEEEHREVVKERRKRKEFEVFVGGLDKNATEHDLKKVFSKVGVVTEVRLMINPQTRRNKGFAFLRFETVEQAKRAVVELKNPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKPAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDRKAKVRARLSRPLSKPLQRGRGKHNNHGTDFRSGRNSGRLARPSRGRPAPSSYPTRVVRGIGSRAPPVRPVSVRSRRPVTSMLERDRPVAPPARTFERRLTAPAYSKSGMKRDYSRREDLPPPRSRVAADYGSRIASQRHTSYRDYPARGSDYPELHRSSSRAAPKRGYVDDGYGQRFERPPPPHLSYREGRPRDYETIAGSKRPYTAIDDVPPRYDTGARQSRSRLDYEYGSSASQYGDAYRDRLGRSSLGYSGSRTSISSQELHGTYGSRQGISYGGGSFGGSDGGMYTSSYGGEYESRGSDVGGRSYSSMYSGRGVGGGSSSYMGGGGGSGSYY 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2723g00003 780 MobiDBLite consensus disorder prediction 1 182 - -
Vium2723g00003 780 CDD RRM_SF 198 269 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 757 780 - -
Vium2723g00003 780 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 127 276 - -
Vium2723g00003 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 432 IPR000504 GO:0003723
Vium2723g00003 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Vium2723g00003 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 344 IPR000504 GO:0003723
Vium2723g00003 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 453 IPR000504 GO:0003723
Vium2723g00003 780 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 780 - -
Vium2723g00003 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Vium2723g00003 780 CDD RRM_SF 375 430 - -
Vium2723g00003 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 360 IPR000504 GO:0003723
Vium2723g00003 780 FunFam Heterogeneous nuclear ribonucleoprotein Q 277 359 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 553 567 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 96 164 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 27 60 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 649 668 - -
Vium2723g00003 780 Gene3D - 277 359 IPR012677 -
Vium2723g00003 780 SUPERFAMILY RNA-binding domain, RBD 368 479 IPR035979 GO:0003676
Vium2723g00003 780 FunFam RNA recognition water-stress protein1 363 489 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 452 634 - -
Vium2723g00003 780 Coils Coil 68 88 - -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 593 608 - -
Vium2723g00003 780 SUPERFAMILY RNA-binding domain, RBD 197 341 IPR035979 GO:0003676
Vium2723g00003 780 MobiDBLite consensus disorder prediction 165 182 - -
Vium2723g00003 780 Coils Coil 110 130 - -
Vium2723g00003 780 Gene3D - 155 276 IPR012677 -
Vium2723g00003 780 MobiDBLite consensus disorder prediction 70 95 - -
Vium2723g00003 780 Gene3D - 365 490 IPR012677 -
Vium2723g00003 780 SMART rrm1_1 374 449 IPR000504 GO:0003723
Vium2723g00003 780 SMART rrm1_1 197 270 IPR000504 GO:0003723
Vium2723g00003 780 SMART rrm1_1 277 356 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2723g00003 Vium-Chr2723 29676 35174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2723g00003 191 459 Eukaryotic Initiation Factors Gene Family AT1G49760 24.183 1.11e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2723g00003 - - gmx:100808583 1106.66