Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2723g00001 ATGGCCTCCCCTTCTTCCCCCACTGATTCCAACCCCCCCTCCGCCCTCCCCCTCACTCTCGCCGCCCCTCCCTCCACCTCTTCCCGCCGTCTCCCCCCGCCATGCTGGACCCCAGAGGAAACCTCCGCCCTCATCGACGCCTACCGCGACAAGTGGTACTCCCTCGGCCGCACCAACCTCAAAGCCACCCACTGGCAAGAGGTCGCCGATGCCGTCACTGCCCAGTGCCCCAACGCTTCCCCCACTGCCAAAACCGCCGTCCAGTGCCGCCACAAGATGGAAAAACTCCGCAAACGCTACCGCACCGAAATCCAACGACTCCGCTCCCTCCCTCTCCCTCGCCTCATCAACAACTCCTCCACCGCTTCCCCCTCCTCCTGGGTTCACTTCAAATCCATGGATTCCATGGAAAAAGGCCCCAACAAACCCCACGCCGACACCACCACCGCCACCAACCCCAACACCCCCACCAACAACCTCAATTTCCCCGACGACGACAACGACGACGACGATCTGTACGAGGAATTCAAGAACGCCCCCGGATCCAACACGCGCAGCCTCAATAAACTCTACAAGAACGGTTTCGGATCCGGATCCGCCTCCGGGTTCCGGATCCGGATCCCGGCGGGGGTGCCAAACCACACCTCTTCGAAATTCTTCAACGCGCCTCCTCCCGGCATGGTGCCGCGCAACGGCGCGAAGAGGGAGCGTGAGAGCGACGCGGTGGCCGAGATGGTGGGCGCGATAAAGGTGTTGCGTGACGGGTTCGTGAGGATGGAGCAGATGAAGATGGAGATGGCGAGGGAGATTGAGAGCATGCGAATGGAGATGGAGATGAAGCGCACGGAGATGATCCTGGACTCTCAGCAGCGGATCGTTGAGGCTTTCGCCAGGGCCGTTTCACAAAAGAGGAGCAAGGGCAAGTCCACGCCTTCTCCCTCGTCGCAACCCTGA 954 0.6164 MASPSSPTDSNPPSALPLTLAAPPSTSSRRLPPPCWTPEETSALIDAYRDKWYSLGRTNLKATHWQEVADAVTAQCPNASPTAKTAVQCRHKMEKLRKRYRTEIQRLRSLPLPRLINNSSTASPSSWVHFKSMDSMEKGPNKPHADTTTATNPNTPTNNLNFPDDDNDDDDLYEEFKNAPGSNTRSLNKLYKNGFGSGSASGFRIRIPAGVPNHTSSKFFNAPPPGMVPRNGAKRERESDAVAEMVGAIKVLRDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILDSQQRIVEAFARAVSQKRSKGKSTPSPSSQP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2723g00001 317 MobiDBLite consensus disorder prediction 1 26 - -
Vium2723g00001 317 MobiDBLite consensus disorder prediction 142 162 - -
Vium2723g00001 317 Pfam Myb/SANT-like DNA-binding domain 34 136 IPR044822 -
Vium2723g00001 317 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 9 302 IPR044823 -
Vium2723g00001 317 Coils Coil 263 283 - -
Vium2723g00001 317 Coils Coil 90 110 - -
Vium2723g00001 317 Gene3D - 36 102 - -
Vium2723g00001 317 MobiDBLite consensus disorder prediction 132 181 - -
Vium2723g00001 317 SMART 118neu2 43 141 IPR006578 -
Vium2723g00001 317 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Vium2723g00001 317 MobiDBLite consensus disorder prediction 1 35 - -
Vium2723g00001 317 FunFam Trihelix transcription factor ASIL2 36 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2723g00001 Vium-Chr2723 19147 20712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2723g00001 35 136 Trihelix Transcription Factor Family AT3G14180 30.392 7.11e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium2723g00001 Myb_DNA-bind_4 7.1e-19 CL0123