Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2721g00002 TTGCAGGGGAAAGCTCGCAGTGATATGACCGTGGAAGAAAGGATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCGTATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAATATAGAGATATGGCTCTGGCTGTAAAGAATCCGTGCCATCTTAACATGGCAGCTTGTTTGATTAAGCTGAACCGTTATGAAGAAGCTATAGGACAATGCAGCATTGCACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACAGATGCTGCCAGGGAAGATTTTCTAAAGGCACGTAAACATGCTCCTCAAGACAAAGCAATTGCAAGAGAACTGAAATTGCTTGCTGAACATGACAAGGCCGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTGAACCAGTTCCTAAGCCAAGAAACTGGCTCATATTTATTTGGCAGTGGTTGCTTTCAGTATTCAATGGCCTTGTCAGCCTCTTCAAGCGTGAAAGGTTTAAATCTGACTAA 618 0.4337 LQGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIALGEDENNVKALFRRGKARAALGQTDAAREDFLKARKHAPQDKAIARELKLLAEHDKAVYQKQKEIYKGIFGPRPEPVPKPRNWLIFIWQWLLSVFNGLVSLFKRERFKSD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2721g00002 205 SMART tpr_5 18 51 IPR019734 GO:0005515
Vium2721g00002 205 SMART tpr_5 69 102 IPR019734 GO:0005515
Vium2721g00002 205 SMART tpr_5 103 136 IPR019734 GO:0005515
Vium2721g00002 205 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 6 174 IPR039663 -
Vium2721g00002 205 SUPERFAMILY TPR-like 9 161 IPR011990 GO:0005515
Vium2721g00002 205 FunFam Peptidylprolyl isomerase 3 131 - -
Vium2721g00002 205 Pfam Tetratricopeptide repeat 104 136 IPR013105 -
Vium2721g00002 205 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
Vium2721g00002 205 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2721g00002 8 165 Calmodulin-binding Proteins AT3G25230 34.810 1.91e-19 84.0