Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2721g00001 ATGAAGAGATTGAGGTCGAGCGATGATCTTCACTCGTACGGCGGCGAGAAGAATAGCAATGGTTGCAAGGATTCCAGTAATCTCAACCGTTCGTTTTCGTCGGCGCAGCGGAGTTTCTATTACAAGCCCGATAATGCGCGCAAGGGTTTGGTCTCATCTTCGTCGTCCCGGTACGAGAGGGATCGGGCAGTTGAGGAGGACCGGGAGGGCTCGAGGGTGGTTCGGAAGCGATCTGAGCACGATTTCGAGGGATTTGATCGGAGGAAAGGGTTCGATCGGTACAGAGAGAGTGATCGGAGTTTGATGCACCGGTCGGAGAGTTTCTGCAGCGGTGGGTCGCGGAGGGATCAGTTTCCGAAGGGTTTTCGGTCGGAGAGGGAGCGGTCGCGTAGGGAGGGGAGTGTGTCGTCTTGGCGGAGAGGGTTGAAGGATTTGGATGAAAGGGAGAGGGTGGTGCGTTCGCCCAAGGGTTTGAGGGATGTGAAGTCTCCGTCTTGGTCCAAGGATTCTGTTTCGGAGAGCGAGCAATCTAAGAAGAGATCTTCTTCTCCCAGACCCTTCAGAGAGGGTAATTCCAACAAGTCTAAGTCTAAGTCTCCCACTTGGTCTAAGGATTCTGTTTCGGAGAGCGAGCAGTCCAAGAGTGTTGAGGTGAAGAAAGCTGAAGAGGAGTTATTGCAGCAGGTTCAGAGTGGGAGTAGTAGTGAGATGGAAGAAGGGGAGCTTGAACCTGAGCCCCAAACGGAAATGGTTGCTCCTGCGAGTGAAGACTTGCCCCCATCTGTTACTTTGGAGACTGATGAGAGGCAAGTTCAGAAGAATGAATGCCACACCAATGATGATGACAATGATGCTTTGATGGATGAGAGACAGGAGTTGTCGACTAAGGAAGAGGTGAAACCTAATGAGGAGGTTGGTTTTGAGGTTAAGGATGCAGAGAAAGAGGCTGATGAGATGCCGGATGTCCAGGAGGATCCGACTGAGAAAATGGCTGTTACTGAAGCTGAACTTGGTTCTGTGGGGAATGGTGATGACGATAAAAAAGAACAGTGTTTGGAAGTCGGTGCTGGGTGCGAGGAGGAAACAAAGAAGGGTGGGGATGTGGAGAAGGAGAAGCTGGTGTTGAATGAAGTCGAATCTAAAGAGGACAAGGATGTAGATCTCGGAACCGGCACGGATGTTGTCAAACCTGAGTTAAATGACGGAGTCTCAACAGAAAATGAAGTCCCCAAGGAAGTGGACAGAGAATTGACGATGGAGGGTGTGGCCAACAAGGTGAAGGATAAGGGGAAAGGAATTTCTGTTGCCCTTGCACCTCCTACTGATGTTGCTCATTCTTCGGATGATGGCTTGTGGATGGAGAGAGGATCAATGGACCTCCCAACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACAAGGGGATTTGAGTTGTTCTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTGGACCACTCGGTTCTCAACAAGCAGAAGTATGACTTGGAGCAGCTTGATCTTACTCTTAGCTTGCCAAATGTTTTGTTACCTATTGGTGCTCATGAGACTGGAGCTCATGAAACAACATCACAAGCCCCTGGATCCCCCTCTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGCACCAACTCGGATGGTTTTCCTGCATCAATGTCCCTTTCAGGTTCCCAATCATTTTATCATAATCCAAGCTGTTCGTTGACAAAGAACTCAGTGGACTATGAACAGTCAGTTGGCAGTCGCCCTTTGTTCCAGGGAATAGATCAAGTTTCCCAGGGGTGTTGGCAAGGTCAGTCTCAGAGTGATCCCAAACAGAAAGAAGTTCCGTTTGGTCAAAGAACCTCGGTTAATGGAAATGGCTCCCTTTTCCAGTCTCAGGCATCATGGGGTGTTTTAGACAGTCAAGCTGTGAAGGGTCAACATTCCAGAGTTCTAGAAGGAAGTTCAAAAGTTGCTGGTGGACTTGATAGGCAATTGAGTTTTCACAAGCAGTTTTCAGGGCAGTCAAGACGCCATGATGATGTCAGATCTCCGCCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTACAGCTTTGAGAAAAAGAGGGAGGTTAGAGACAGGAGTAGTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTTACGATGGGTGGAGCTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCATGCAATGTCCAGAAAATTTCATGAAATGACAGGACAGTCCATAGCATGTCTGAAGGAGGGTATTCGTGAAATCATGCTCAATGCTGATAAGCACGGGCAGATACTTGCTTTCCAAAAAGTTCTTCAGAACAGGTCTGATGTGATCTTGGATGTTCTATTGAAGTGCCATCGAGTGCAACTGGAAATTTTGGTTGCTTTGAAAACTGGTTTAACTCATTTCCTCCACCTAGACAGCAGCATTTCGTCTTCTGAGTTGGCTCAAATTTTTCTGAACTCAAGGTGTAAGAATCTTTCATGTCGAAGTCAGTTACCTGTAGATGAATGTGATTGCAAGGTTTGTGCGCAGAAGAATGGTTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCTAAGTTTGACAATGCCTCAAATACATGTAGCTGGGTGGGATGTGATGTTTGCCTTCATTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGGCTGAAATGCAGTTTCACTGCATTGCTTGTGACCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCATAATTTTGCAAAAGAATGGTCTGTTGAAGCCCTTTGCAGAGAGCTTGAATATGTGAAGAGAATATTTTCTGGCAGCAAGGATATGAGAGGGAGACAGTTGCATGAAATTGCAGAGCAAATGCTGCCGAGGCTGGCAAATAAGTCAAATCTTCCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTCGGATGGTGATTCTTCCAAATTAGCCATGACAGCAAACTTTCCTGGGAAGGAGCAGATTAAAGAAAACAATGGAGTAGCAGGGCCTAGCCAGGAAGCAGCAGCTTGGATGAAGTCTATTTATTCAGAAAAACCACCTCTGTTAGAAAGGCCTGTGAATATCCTTCCTACCTTTGACCAGAATGATAAAAGAACACTTGCGCAAGAGTTGCAGATGAGTAGCATCCAGAAGGACTACTGTTTTGACGAATTGGAGAGTGTAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAGGAAGAATATGCCAATCGAATTGCCAAGTTGCGATTGACTGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATATGGAGTATTTAAACATGAAAAGGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACTAAGATGAGCCTTGCCATGTGA 3579 0.4593 MKRLRSSDDLHSYGGEKNSNGCKDSSNLNRSFSSAQRSFYYKPDNARKGLVSSSSSRYERDRAVEEDREGSRVVRKRSEHDFEGFDRRKGFDRYRESDRSLMHRSESFCSGGSRRDQFPKGFRSERERSRREGSVSSWRRGLKDLDERERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSPRPFREGNSNKSKSKSPTWSKDSVSESEQSKSVEVKKAEEELLQQVQSGSSSEMEEGELEPEPQTEMVAPASEDLPPSVTLETDERQVQKNECHTNDDDNDALMDERQELSTKEEVKPNEEVGFEVKDAEKEADEMPDVQEDPTEKMAVTEAELGSVGNGDDDKKEQCLEVGAGCEEETKKGGDVEKEKLVLNEVESKEDKDVDLGTGTDVVKPELNDGVSTENEVPKEVDRELTMEGVANKVKDKGKGISVALAPPTDVAHSSDDGLWMERGSMDLPTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNKQKYDLEQLDLTLSLPNVLLPIGAHETGAHETTSQAPGSPSQARSVQSLSNTFCTNSDGFPASMSLSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFQGIDQVSQGCWQGQSQSDPKQKEVPFGQRTSVNGNGSLFQSQASWGVLDSQAVKGQHSRVLEGSSKVAGGLDRQLSFHKQFSGQSRRHDDVRSPPQSVGSHDIGSNYSFEKKREVRDRSSGSLYRTTSQKEQEQLTMGGADFVETIIARIVSEPVHAMSRKFHEMTGQSIACLKEGIREIMLNADKHGQILAFQKVLQNRSDVILDVLLKCHRVQLEILVALKTGLTHFLHLDSSISSSELAQIFLNSRCKNLSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMAEMQFHCIACDHPSEMFGFVKEVFHNFAKEWSVEALCRELEYVKRIFSGSKDMRGRQLHEIAEQMLPRLANKSNLPEVLRHIMSFLSDGDSSKLAMTANFPGKEQIKENNGVAGPSQEAAAWMKSIYSEKPPLLERPVNILPTFDQNDKRTLAQELQMSSIQKDYCFDELESVVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYANRIAKLRLTETDEIRKQKFEEAQALERAHMEYLNMKRRMETDIKDLLSKMEATKMSLAM 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2721g00001 1192 CDD PHD_OBE1_like 873 929 IPR047578 -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 381 413 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 210 224 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 102 348 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 1 29 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 118 157 - -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 808 823 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 880 900 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 793 808 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1087 1107 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 950 969 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 834 855 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1126 1148 IPR004082 -
Vium2721g00001 1192 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 754 776 IPR004082 -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 699 713 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 268 331 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 673 725 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 43 79 - -
Vium2721g00001 1192 Coils Coil 1093 1131 - -
Vium2721g00001 1192 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1189 IPR004082 -
Vium2721g00001 1192 Pfam Coiled-coil region of Oberon 1065 1180 IPR032535 -
Vium2721g00001 1192 Pfam PHD - plant homeodomain finger protein 843 963 IPR032881 -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 54 79 - -
Vium2721g00001 1192 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2721g00001 Vium-Chr2721 3415 8573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2721g00001 843 988 PHD Gene Family AT5G57380 28.082 2.35e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2721g00001 - - gmx:100817003 1977.99