Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2719g00021 ATGGGAACTTCAACTCTTGGCCTTGTACTTGTACCACTTCTTTTGTGCTTTGCTTCTGTTTCCTCTCTTCCCATGTCTCTGAGAAGGCAAGCCTCTATCTTGGTTTCCCTCAAACAAGATTTTGAGGCTAACACTGATTCTCTCAGAAGCTGGGACATGACTAATAGTGTGTCCCTTTGCACTTGGGAGGGTATTGAGTGTGACCAAAAGAATAGGTCAGTGGTGTCATTGGACATAACCAACCTCAACCTTTCTGGCACACTTTCACCTTCCATCACAGCACTCAGGAGCCTTGAGAGTGTATCACTTGCTGGGAATGGCTTCTCAGGAGGGTTCCCTAGTGATATTCACAAGCTGGCAGGGCTGAGATTCCTCAACATATCCGCCAACAAGTTCAGTGGAGACATGAATTGGGAGTTCTCTATGTTGAAAGAGCTTGAGGTGCTGGATGCTTATGACAACGAGTTCAACTGCTCCCTCCCTCTTGGTGTCACTCAGCTCCCCAAGCTCAATACCTTGAATTTTGGCGGGAATTTTTTCTATGGTGAGATCCCTCCAAGCTATGGAGACATGGTTCAGCTCAACTTTCTGTCTCTTGCCGGAAATGATTTGAGGGGTGTCATACCATCTGAGCTTGGGAATCTCACTGACCTGACACAGCTTTTCTTGGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGTTGGTTAATTTGACTCATCTTGACCTTGCAAGCTGTGGTTTGACAGGTCCAATTCCGGCTGAGTTGGGAAATCTCAACAAATTAGACACTCTCTTTTTGCAAACTAACCAGCTCAGTGGCTCAATCCCTCCCCAACTAGGCAACATGAGTGGCATGAAGTGTCTTGATCTGTCAAACAATGAGCTAACAGGAGACATCCCCAATGAGTTTTCAGGCCTTCACCAACTCACCCTCTTGAACTTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCGGAGCTGCCTAACTTGGAAGTGCTGAAACTTTGGCATAACAACTTCACAGGGGCAATTCCCCCAAGACTTGGCCAAAATGGTAAACTGGTTGAGCTTGACCTGTCAACAAACAATCTCACTGGATTGGTGCCTAAATCTCTTTGCCTTGGGAGGAGGCTGAGGATTTTGATTCTTCTCAATAATTTTCTCTTTGGATCTTTGCCGGCTGATATTGGCCAATGCTACACACTACAGAGAGTTCGTTTAGGACAGAACTATTTGACAGGGTCAATACCAAATGGTTTTCTGCACTTGCCTGAGTTAGATCTTTTAGAATTGCAGAACAATTACCTCAGTGGTTGGCTTCCACAAGAGACAAACACTGCACCCTCTAAACTTGGACAGTTGAATCTATCAAACAATCGCCTAACCGGGTCTCTACCAAGCTCTATTGGAAACTTTCCCAACTTGCAAATTCTGCTGCTTCACGGAAATAGACTCTCAGGAGAAATTCCTCCAGATATAGGGAGGTTAAAAAATATCCTCAAGTTGGATTTAAGTGTCAACAACTTCTCAGGCACCATCCCTCCAGAGATAGGTAACTGTTTGTTGCTCACCTATTTAGATTTGAGCCAAAACCAACTGTCAGGTCCTATCCCAGTTCAGCTTTCTCAAATTCACATAATGAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAATCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGTTCAATACCTGAGGAGGGGCAATTTTCAGTGTTTAACTCTACATCCTTTATTGGGAATCCTCGACTCTGTGGATATGAAATGAATCCATGTAAACATTCTTCAAATTCTGTATTGGAGTCCCAAGACAGTAGCAGCACAAAACCTGGTGTTCCTGGGAAGTATAAGCTTCTTTTTGCAGTGGCACTGTTGGCTTGTTCGTTAGCATTTGCAACCTTGGCCTTTATCAAGAGCAGGAAGCAAAGGAGGCACTCCAATTCATGGAAGCTCACAACATTTCAGAAACTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGAGCTGGGGTTGTGTACCATGGAACCATGCCAAATGGAGAGCAAGTAGCTGTGAAGAAGCTGTTAGGAATCAACAAAGGATGTTCTCATGATAATGGTCTCTCTGCAGAAATAAGGACACTAGGCAGAATCAGGCACAGGTACATTGTGAGGTTGCTGGCATTTTGCTCAAATAGAGAGACCAATTTGCTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGAGAGGTTTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACCAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGCTATTTACACCATGATTGTTCCCCTCTGATAATCCACAGAGATGTGAAGTCAAACAACATACTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGCATGTCATCCATTGCTGGTTCTTACGGTTACATAGCTCCAGCTTTGGAGTGGTGTTGCTAG 2631 0.4417 MGTSTLGLVLVPLLLCFASVSSLPMSLRRQASILVSLKQDFEANTDSLRSWDMTNSVSLCTWEGIECDQKNRSVVSLDITNLNLSGTLSPSITALRSLESVSLAGNGFSGGFPSDIHKLAGLRFLNISANKFSGDMNWEFSMLKELEVLDAYDNEFNCSLPLGVTQLPKLNTLNFGGNFFYGEIPPSYGDMVQLNFLSLAGNDLRGVIPSELGNLTDLTQLFLGYYNQFDGGIPPQFGKLVNLTHLDLASCGLTGPIPAELGNLNKLDTLFLQTNQLSGSIPPQLGNMSGMKCLDLSNNELTGDIPNEFSGLHQLTLLNLFINRLHGEIPPFIAELPNLEVLKLWHNNFTGAIPPRLGQNGKLVELDLSTNNLTGLVPKSLCLGRRLRILILLNNFLFGSLPADIGQCYTLQRVRLGQNYLTGSIPNGFLHLPELDLLELQNNYLSGWLPQETNTAPSKLGQLNLSNNRLTGSLPSSIGNFPNLQILLLHGNRLSGEIPPDIGRLKNILKLDLSVNNFSGTIPPEIGNCLLLTYLDLSQNQLSGPIPVQLSQIHIMNYLNVSWNHLNQNLPKELGAMKGLTSADFSHNDFSGSIPEEGQFSVFNSTSFIGNPRLCGYEMNPCKHSSNSVLESQDSSSTKPGVPGKYKLLFAVALLACSLAFATLAFIKSRKQRRHSNSWKLTTFQKLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPALEWCC 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2719g00021 876 Gene3D Ribonuclease Inhibitor 231 332 IPR032675 -
Vium2719g00021 876 FunFam Os07g0541700 protein 776 864 - -
Vium2719g00021 876 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 667 775 - -
Vium2719g00021 876 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 140 227 - -
Vium2719g00021 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Vium2719g00021 876 Pfam Protein kinase domain 700 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2719g00021 876 Gene3D Transferase(Phosphotransferase) domain 1 776 873 - -
Vium2719g00021 876 Gene3D Phosphorylase Kinase; domain 1 666 775 - -
Vium2719g00021 876 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 29 139 - -
Vium2719g00021 876 SMART LRR_typ_2 288 311 IPR003591 -
Vium2719g00021 876 SMART LRR_typ_2 481 505 IPR003591 -
Vium2719g00021 876 SMART LRR_typ_2 191 215 IPR003591 -
Vium2719g00021 876 SMART LRR_typ_2 361 383 IPR003591 -
Vium2719g00021 876 SMART LRR_typ_2 336 360 IPR003591 -
Vium2719g00021 876 SMART LRR_typ_2 240 264 IPR003591 -
Vium2719g00021 876 SMART LRR_typ_2 432 456 IPR003591 -
Vium2719g00021 876 FunFam leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 230 332 - -
Vium2719g00021 876 SMART serkin_6 698 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2719g00021 876 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 340 626 - -
Vium2719g00021 876 SUPERFAMILY Protein kinase-like (PK-like) 691 871 IPR011009 -
Vium2719g00021 876 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vium2719g00021 876 Gene3D Ribonuclease Inhibitor 29 140 IPR032675 -
Vium2719g00021 876 ProSiteProfiles Protein kinase domain profile. 698 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2719g00021 876 Gene3D Ribonuclease Inhibitor 337 629 IPR032675 -
Vium2719g00021 876 SUPERFAMILY L domain-like 305 628 - -
Vium2719g00021 876 SUPERFAMILY L domain-like 44 397 - -
Vium2719g00021 876 Gene3D Ribonuclease Inhibitor 141 230 IPR032675 -
Vium2719g00021 876 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 199 - -
Vium2719g00021 876 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515
Vium2719g00021 876 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2719g00021 Vium-Chr2719 149151 153288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2719g00021 20 874 Receptor kinase-like Gene Family AT5G65700 55.995 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium2719g00021 Pkinase 2.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2719g00021 - - gmx:100816158 1591.25