Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2719g00020 ATGGGAACTTCAACTCTTGGCCTTGTACTTGTACCACTTCTTTTGTGCTTTGCTTCTGTTTCCTCTCTTCCCATGTCTCTGAGAAGGCAAGCCTCTATCTTGGTTTCCCTCAAACAAGATTTTGAGGCTAACACTGATTCTCTCAGAAGCTGGGACATGACTAATAGTGTGTCCCTTTGCACTTGGGAGGGTATTGAGTGTGACCAAAAGAATAGGTCAGTGGTGTCATTGGACATAACCAACCTCAACCTTTCTGGCACACTTTCACCTTCCATCACAGCACTCAGGAGCCTTGAGAGTGTATCACTTGCTGGGAATGGCTTCTCAGGAGGGTTCCCTAGTGATATTCACAAGCTGGCAGGGCTGAGATTCCTCAACATATCCGCCAACAAGTTCAGTGGAGACATGAATTGGGAGTTCTCTATGTTGAAAGAGCTTGAGGTGCTGGATGCTTATGACAACGAGTTCAACTGCTCCCTCCCTCTTGGTGTCACTCAGCTCCCCAAGCTCAATACCTTGAATTTTGGCGGGAATTTTTTCTATGGTGAGATCCCTCCAAGCTATGGAGACATGGTTCAGCTCAACTTTCTGTCTCTTGCCGGAAATGATTTGAGGGGTGTCATACCATCTGAGCTTGGGAATCTCACTGACCTGACACAGCTTTTCTTGGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGTTGGTTAATTTGACTCATCTTGACCTTGCAAGCTGTGGTTTGACAGGTCCAATTCCGGCTGAGTTGGGAAATCTCAACAAATTAGACACTCTCTTTTTGCAAACTAACCAGCTCAGTGGCTCAATCCCTCCCCAACTAGGCAACATGAGTGGCATGAAGTGTCTTGATCTGTCAAACAATGAGCTAACAGGAGACATCCCCAATGAGTTTTCAGGCCTTCACCAACTCACCCTCTTGAACTTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCGGAGCTGCCTAACTTGGAAGTGCTGAAACTTTGGCATAACAACTTCACAGGGGCAATTCCCCCAAGACTTGGCCAAAATGGTAAACTGGTTGAGCTTGACCTGTCAACAAACAATCTCACTGGATTGGTGCCTAAATCTCTTTGCCTTGGGAGGAGGCTGAGGATTTTGATTCTTCTCAATAATTTTCTCTTTGGATCTTTGCCGGCTGATATTGGCCAATGCTACACACTACAGAGAGTTCGTTTAGGACAGAACTATTTGACAGGGTCAATACCAAATGGTTTTCTGCACTTGCCTGAGTTAGATCTTTTAGAATTGCAGAACAATTACCTCAGTGGTTGGCTTCCACAAGAGACAAACACTGCACCCTCTAAACTTGGACAGTTGAATCTATCAAACAATCGCCTAACCGGGTCTCTACCAAGCTCTATTGGAAACTTTCCCAACTTGCAAATTCTGCTGCTTCACGGAAATAGACTCTCAGGAGAAATTCCTCCAGATATAGGGAGGTTAAAAAATATCCTCAAGTTGGATTTAAGTGTCAACAACTTCTCAGGCACCATCCCTCCAGAGATAGGTAACTGTTTGTTGCTCACCTATTTAGATTTGAGCCAAAACCAACTGTCAGGTCCTATCCCAGTTCAGCTTTCTCAAATTCACATAATGAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAATCTTCCCAAGGAACTTGGGGCCATGAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGTTCAATACCTGAGGAGGGGCAATTTTCAGTGTTTAACTCTACATCCTTTATTGGGAATCCTCGACTCTGTGGATATGAAATGAATCCATGTAAACATTCTTCAAATTCTGTATTGGAGTCCCAAGACAGTAGCAGCACAAAACCTGGTGTTCCTGGGAAGTATAAGCTTCTTTTTGCAGTGGCACTGTTGGCTTGTTCGTTAGCATTTGCAACCTTGGCCTTTATCAAGAGCAGGAAGCAAAGGAGGCACTCCAATTCATGGAAGCTCACAACATTTCAGAAACTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGAGCTGGGGTTGTGTACCATGGAACCATGCCAAATGGAGAGCAAGTAGCTGTGAAGAAGCTGTTAGGAATCAACAAAGGATGTTCTCATGATAATGGTCTCTCTGCAGAAATAAGGACACTAGGCAGAATCAGGCACAGGTACATTGTGAGGTTGCTGGCATTTTGCTCAAATAGAGAGACCAATTTGCTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGAGAGGTTTTGCATGGGAAAAGGGGAGAGTTTCTCAAGTGGGATACCAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGCTATTTACACCATGATTGTTCCCCTCTGATAATCCACAGAGATGTGAAGTCAAACAACATACTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGCATGTCATCCATTGCTGGTTCTTACGGTTACATAGCTCCAGAATATGCATACACGTTGAAAGTTGATGAGAAAAGTGATGTCTACAGCTTTGGAGTGGTGTTGCTAGAACTACTAACTGGTAGAAAGCCAGTGGGGAATTTTGGGGAAGAAGGAGTAGACATTGTTCAGTGGACCAAGTTGCAAACAAATTGGAGCAAAGAGAAAGTGGTGAAGATTCTTGATGAAAGGCTATGTCACATTCCCTTAGATGAAGCAAAGCAGGTATACTTTGTGGCCATGTTATGTGTTCAGGAACAAAGCGTGGAGAGACCAACCATGAGGGAAGTGGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTCCAAAAGCAGTGA 2949 0.4391 MGTSTLGLVLVPLLLCFASVSSLPMSLRRQASILVSLKQDFEANTDSLRSWDMTNSVSLCTWEGIECDQKNRSVVSLDITNLNLSGTLSPSITALRSLESVSLAGNGFSGGFPSDIHKLAGLRFLNISANKFSGDMNWEFSMLKELEVLDAYDNEFNCSLPLGVTQLPKLNTLNFGGNFFYGEIPPSYGDMVQLNFLSLAGNDLRGVIPSELGNLTDLTQLFLGYYNQFDGGIPPQFGKLVNLTHLDLASCGLTGPIPAELGNLNKLDTLFLQTNQLSGSIPPQLGNMSGMKCLDLSNNELTGDIPNEFSGLHQLTLLNLFINRLHGEIPPFIAELPNLEVLKLWHNNFTGAIPPRLGQNGKLVELDLSTNNLTGLVPKSLCLGRRLRILILLNNFLFGSLPADIGQCYTLQRVRLGQNYLTGSIPNGFLHLPELDLLELQNNYLSGWLPQETNTAPSKLGQLNLSNNRLTGSLPSSIGNFPNLQILLLHGNRLSGEIPPDIGRLKNILKLDLSVNNFSGTIPPEIGNCLLLTYLDLSQNQLSGPIPVQLSQIHIMNYLNVSWNHLNQNLPKELGAMKGLTSADFSHNDFSGSIPEEGQFSVFNSTSFIGNPRLCGYEMNPCKHSSNSVLESQDSSSTKPGVPGKYKLLFAVALLACSLAFATLAFIKSRKQRRHSNSWKLTTFQKLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGINKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRKPVGNFGEEGVDIVQWTKLQTNWSKEKVVKILDERLCHIPLDEAKQVYFVAMLCVQEQSVERPTMREVVEMLAQAKQPNTFQKQ 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2719g00020 982 Gene3D Ribonuclease Inhibitor 284 360 IPR032675 -
Vium2719g00020 982 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 193 972 - -
Vium2719g00020 982 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 29 139 - -
Vium2719g00020 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Vium2719g00020 982 SUPERFAMILY L domain-like 305 626 - -
Vium2719g00020 982 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Vium2719g00020 982 Pfam Leucine Rich Repeat 292 312 IPR001611 GO:0005515
Vium2719g00020 982 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515
Vium2719g00020 982 Pfam Protein tyrosine and serine/threonine kinase 700 970 IPR001245 GO:0004672|GO:0006468
Vium2719g00020 982 SMART LRR_typ_2 481 505 IPR003591 -
Vium2719g00020 982 SMART LRR_typ_2 288 311 IPR003591 -
Vium2719g00020 982 SMART LRR_typ_2 191 215 IPR003591 -
Vium2719g00020 982 SMART LRR_typ_2 361 383 IPR003591 -
Vium2719g00020 982 SMART LRR_typ_2 336 360 IPR003591 -
Vium2719g00020 982 SMART LRR_typ_2 240 264 IPR003591 -
Vium2719g00020 982 SMART LRR_typ_2 432 456 IPR003591 -
Vium2719g00020 982 Gene3D Transferase(Phosphotransferase) domain 1 776 982 - -
Vium2719g00020 982 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 667 775 - -
Vium2719g00020 982 SUPERFAMILY L domain-like 43 378 - -
Vium2719g00020 982 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 776 982 - -
Vium2719g00020 982 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vium2719g00020 982 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Vium2719g00020 982 SMART serkin_6 698 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2719g00020 982 Gene3D Phosphorylase Kinase; domain 1 666 775 - -
Vium2719g00020 982 FunFam leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 230 332 - -
Vium2719g00020 982 Gene3D Ribonuclease Inhibitor 361 626 IPR032675 -
Vium2719g00020 982 ProSiteProfiles Protein kinase domain profile. 698 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2719g00020 982 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 140 227 - -
Vium2719g00020 982 SUPERFAMILY Protein kinase-like (PK-like) 692 970 IPR011009 -
Vium2719g00020 982 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 340 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2719g00020 Vium-Chr2719 148629 153288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2719g00020 20 972 Receptor kinase-like Gene Family AT5G65700 57.680 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium2719g00020 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2719g00020 - - gmx:100816158 1808.88