Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2719g00016 ATGCTGTCGGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCATTACCGGGGTATGAAAAAGCCATCTGAATCAAATTCATGGCCACAACGGATGTCAACCACTGCAAATAGAACTTTGCATAGGAATTCAAGGTTTTCAGACGATGCTGAAGAAGATGACTATGATGATGGAGATAATGATAACGATGGTGATGACGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGACCCTGATGATGCAGACTTTGAGCCTGCCACAATTGGTCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGACGATGAGTCTTTCTATGCAAAACGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAGCATAAAATCTACCAGAGATCGCAAAGCGTATGCTCCATCTGGTCGGCAAAGAAGACTTAAATCATCTTTTGAGGACAATGAGTCAACAACTGAGGATTCTGACAATGACAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGGGGTGTTCATGCTCGCAAAAATAATGGTCGTTCTTCTTCAGTAACAGGTCTTTCTATGCGCAACAGTGAGGTTCGGACATCTAGTAGGACTGTTAGGAAGGTATCATATATGGAAAGTGAAGAAAGTGAAGAAGTCGATGAAGGGAAAAAGAAAAAATCCCAAAAGGAAGAAATTGATGAGGAAGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCTGAAGATGCCGAAAGGAATAACCGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCGGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAATGGAAATCTTTTGCGGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTATAGGAGGTCAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATAAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCGATGTTATTCCAGAATACTTGGTCAAGTGGCACGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACACTGATATTGCTTTTGCCCAAAATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCAGCAGTTCAAGGAAAGATGGTGGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCAGTCTCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCGCTCTCCACTCTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGAGCTAGTCGAGAGGTTTGTCAACTGTATGAATTTTATAATGAAAAAAGACCAGGGAAGCCAATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCTGTTCTGTCCAAAATCAAATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTGCTTCATTTCCTTGATCCTGATAAGTTCAGGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCACACAGAACTGAGGCCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCTCCCAAAATTGAGCGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCAGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGGGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTTCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCCGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGATCACTTGGTGATTCAAAAATTGAATGCAGAGGGTAGATTGGAGAAGAAAGAAGCCAAAAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATCAAACCTGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATAAAAAGCTATGCAGAAGTTGATCCATCTGAAAAAACTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGTCGGAAACCAGATTATTCTGCTCCTGCAGTACCGATGATTGAAGGAGCATGTGTTCAAGTGAGAAGTTGGTCATATGGCAATTTATCTAAAAGAGACGCTCTTCGATTTTCTCGTTCTGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCGGCTCCAACTGGAGCACAGGTTGAACTTTTCAATGCTTTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGATCGATATGATGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGTTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCACCAGTAGAACTTCAACATCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGTGAAAAATGCCAATAGCAAAGTCGGACGGAAGCCTTCAAAGAAAGAGCGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCTGTTAATGTCCAAATGAGAAAGGAAAGATTTCAAAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAACAGTTTAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTCGAAGAAATGAAGACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAGAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTCGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAGCCCTATAAGCAAGATAGAATGACTGTGCGATTGTGGAAATACGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGTGTTGGCCCTTCTCACGGCAATGGATCGGTATCTGCTTCATTTACCAGAAATGGAAACCCATTCCGTCGGCATATGGAGAGGCAAAGAGGATTAAAAAATATGAGTACCTATCAAACGCCAGAACCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAAAGGACCGTAAGTAATGGACTCAGGATTACTGATCCTAACTCACTTGGGATCCTTGGTGCCGGTCCCTCGGATAAACGCTTTGCTAATGAGAAACCTTACAGGACACAACCTGGTGGGTTTGCGTCAAGACAGGGCTTCTCTTCAGGTATAAAGTAA 4776 0.4081 MLSDEYYEQDGEEQSDSLHYRGMKKPSESNSWPQRMSTTANRTLHRNSRFSDDAEEDDYDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATIGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDESFYAKRPKGRQRGKIGQSIKSTRDRKAYAPSGRQRRLKSSFEDNESTTEDSDNDSDEDFKSSKKRGVHARKNNGRSSSVTGLSMRNSEVRTSSRTVRKVSYMESEESEEVDEGKKKKSQKEEIDEEDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGDVIPEYLVKWHGLSYAEATWEKDTDIAFAQNAIDEYKAREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQLYEFYNEKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSEKTNKRKKKEPEPPERVQKRRKPDYSAPAVPMIEGACVQVRSWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGAVGAAPTGAQVELFNAFIDGCTEAVELGNLDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYDDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQMRKERFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSASFTRNGNPFRRHMERQRGLKNMSTYQTPEPVDNSGKSEAWKRRRRAESDNQFQGQPPPQRTVSNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGGFASRQGFSSGIK 1591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 54 88 - -
Vium2719g00016 1591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 685 967 IPR027417 -
Vium2719g00016 1591 SMART chromo_7 254 336 IPR000953 -
Vium2719g00016 1591 SMART chromo_7 366 425 IPR000953 -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 106 123 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1531 1551 - -
Vium2719g00016 1591 Pfam SNF2-related domain 480 749 IPR000330 GO:0005524|GO:0140658
Vium2719g00016 1591 FunFam Photoperiod-independent early flowering 1 431 705 - -
Vium2719g00016 1591 ProSiteProfiles Chromo and chromo shadow domain profile. 368 432 IPR000953 -
Vium2719g00016 1591 Pfam Domain of unknown function (DUF4208) 1368 1460 IPR025260 -
Vium2719g00016 1591 Gene3D - 370 422 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1047 1082 - -
Vium2719g00016 1591 Gene3D - 692 922 IPR027417 -
Vium2719g00016 1591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 473 645 IPR014001 -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1465 1591 - -
Vium2719g00016 1591 SUPERFAMILY Chromo domain-like 251 335 IPR016197 -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 27 45 - -
Vium2719g00016 1591 Coils Coil 921 941 - -
Vium2719g00016 1591 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 591 600 IPR002464 -
Vium2719g00016 1591 FunFam Chromo domain-containing protein 1 243 368 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 225 277 - -
Vium2719g00016 1591 SMART DUF4208_2 1356 1461 IPR025260 -
Vium2719g00016 1591 SMART ultradead3 457 657 IPR014001 -
Vium2719g00016 1591 CDD CD1_tandem 253 333 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1 278 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 198 224 - -
Vium2719g00016 1591 CDD CD2_tandem 366 422 - -
Vium2719g00016 1591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 781 932 IPR001650 -
Vium2719g00016 1591 Gene3D - 452 691 IPR038718 -
Vium2719g00016 1591 Pfam Helicase conserved C-terminal domain 778 891 IPR001650 -
Vium2719g00016 1591 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 692 922 - -
Vium2719g00016 1591 Coils Coil 975 995 - -
Vium2719g00016 1591 Gene3D - 240 367 - -
Vium2719g00016 1591 ProSiteProfiles Chromo and chromo shadow domain profile. 255 343 IPR000953 -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 143 171 - -
Vium2719g00016 1591 FunFam protein CHROMATIN REMODELING 5 isoform X2 370 422 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1052 1080 - -
Vium2719g00016 1591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 682 IPR027417 -
Vium2719g00016 1591 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 49 1520 - -
Vium2719g00016 1591 CDD SF2_C_SNF 767 902 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1516 1530 - -
Vium2719g00016 1591 MobiDBLite consensus disorder prediction 1500 1514 - -
Vium2719g00016 1591 Gene3D - 1188 1303 - -
Vium2719g00016 1591 SUPERFAMILY Chromo domain-like 347 423 IPR016197 -
Vium2719g00016 1591 SMART helicmild6 807 891 IPR001650 -
Vium2719g00016 1591 Pfam Chromo (CHRromatin Organisation MOdifier) domain 369 423 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2719g00016 Vium-Chr2719 100114 117032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2719g00016 483 918 RAD5 or RAD16-like Gene Family AT1G02670 25.595 8.58e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium2719g00016 SNF2_N 1.8e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2719g00016 K11367 - gmx:100792398 2771.11