Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2719g00008 ATGATTGATAAAAGATGGCCCTACTCTTTTCAGCCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATTTCCCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCATCTGAGGCTAATAGTCCTCGAACCTACACAAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAACGAAAGCCTGAAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATACGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTATATGCCGTCCCTCAAAAGGCTTTCTATCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGGATGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCATCGAGTTGGGAGTTGTTCGGGTGTGAAAATGGATTCTCTATTTCCAAAAGCTTTGGAGTCTGCAGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCGGCCCTAGTGACCAAGCAAGGTGAAATTTTCTCGTGGGGGGAGGAATCAGGTGGCAGACTTGGGCATGGTGTTGACTCTGATGTGCTCCATCCAAAGCTTATTGATGCTCTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTAATGGTGCATACAATTATGGCCTTCTTGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGTCCCTTGGAAGGCATACATGTTTCATATATTTCCTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGAACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCGTGTGGTGTTTGGCACACAGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTCCCTACCTGTGTTGCGCTCATTGAACACAATTTTTGCCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCTGATGGGAAGCTACCAATTCGTGTTGAAGGGAAATTGTCAAAAAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCACGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTAGTAGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCTGGTATTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCGAACAAACCTTATCGTGTCTGTGATAATTGTTTTAACAAACTTAGGAAAGCAGTAGAAACTGATTCTTCGTCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATAATGGGTCTCTGGAGTTAATTGATAAGGATGACAAATTAGATTCTAGATCTCGAAATCAGCTTGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTCAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCGATATCTAGACGACCTAGTCCACCTCGTTCAACTACACCGACCCCAACGCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGCTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGACCTGCTAGGAGTGTGAAATCACCGTCTCTTGCTTCTTCTTTTGGTTCTAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAGCATTAAGTCCAGAGGCAGAATTAACTGCATCAAACAACCAGTTACTTTCAAATGGATCAGGCACTGTTAGTAACCGAAGTGCAGGTCACAATAAAATGAGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCTCATGATTGACAAGTCTTCTGTCGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3111 0.4349 MIDKRWPYSFQPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKAFYPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCSGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGIDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAVETDSSSHSSVSRRGSVNNGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGPARSVKSPSLASSFGSNPCSNDVNYASIDRLNIQALSPEAELTASNNQLLSNGSGTVSNRSAGHNKMSQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVLMIDKSSVGVGSEDLAH 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2719g00008 1036 SUPERFAMILY RCC1/BLIP-II 195 585 IPR009091 -
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 365 416 IPR000408 -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 717 731 - -
Vium2719g00008 1036 Pfam FYVE zinc finger 584 650 IPR000306 GO:0046872
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 429 479 IPR000408 -
Vium2719g00008 1036 FunFam PH, RCC1 and FYVE domains-containing protein 1 167 418 - -
Vium2719g00008 1036 FunFam Putative E3 ubiquitin-protein ligase HERC1 590 658 - -
Vium2719g00008 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 365 413 IPR000408 -
Vium2719g00008 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 258 306 IPR000408 -
Vium2719g00008 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 309 361 IPR000408 -
Vium2719g00008 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 533 580 IPR000408 -
Vium2719g00008 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Vium2719g00008 1036 Pfam Regulator of chromosome condensation (RCC1) repeat 479 528 IPR000408 -
Vium2719g00008 1036 Pfam Unstructured region between BRX_N and BRX domain 887 956 - -
Vium2719g00008 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 351 361 IPR000408 -
Vium2719g00008 1036 Gene3D - 9 66 IPR011993 -
Vium2719g00008 1036 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 869 - -
Vium2719g00008 1036 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 588 650 IPR017455 -
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 258 309 IPR000408 -
Vium2719g00008 1036 Coils Coil 794 870 - -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 469 487 IPR000408 -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 310 326 IPR000408 -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 367 381 IPR000408 -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 527 548 IPR000408 -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 241 254 IPR000408 -
Vium2719g00008 1036 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Vium2719g00008 1036 ProSiteProfiles PH domain profile. 1 58 IPR001849 -
Vium2719g00008 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 403 413 IPR000408 -
Vium2719g00008 1036 Pfam Transcription factor BRX N-terminal domain 845 878 IPR027988 -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 951 965 - -
Vium2719g00008 1036 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 244 254 IPR000408 -
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 480 531 IPR000408 -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 920 950 - -
Vium2719g00008 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 657 IPR013083 -
Vium2719g00008 1036 SMART fyve_4 582 651 IPR000306 GO:0046872
Vium2719g00008 1036 Gene3D - 425 595 IPR009091 -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 72 100 - -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 708 731 - -
Vium2719g00008 1036 Pfam Transcription factor regulating root and shoot growth via Pin3 962 1017 IPR013591 -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 920 965 - -
Vium2719g00008 1036 ProSiteProfiles BRX domain profile. 963 1018 IPR013591 -
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 364 IPR000408 -
Vium2719g00008 1036 CDD FYVE_like_SF 593 646 - -
Vium2719g00008 1036 SUPERFAMILY PH domain-like 12 57 - -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 64 120 - -
Vium2719g00008 1036 SUPERFAMILY FYVE/PHD zinc finger 584 655 IPR011011 -
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 196 257 IPR000408 -
Vium2719g00008 1036 Gene3D - 190 424 IPR009091 -
Vium2719g00008 1036 FunFam PH, RCC1 and FYVE domains-containing protein 1 419 589 - -
Vium2719g00008 1036 MobiDBLite consensus disorder prediction 762 792 - -
Vium2719g00008 1036 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 532 583 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2719g00008 Vium-Chr2719 56918 62649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2719g00008 854 1027 Major Intrinsic Protein MIP AT1G31880 32.778 2.23e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2719g00008 - - gmx:100802464 1864.35