Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium2719g00007 | ATGGAAGGGTTCGGAACCGGTCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGGGGAAAACCCAAGTTTTGCCCCTTTCGTCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATTTCCCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCATCTGAGGCTAATAGTCCTCGAACCTACACAAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAACGAAAGCCTGAAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATACGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTATATGCCGTCCCTCAAAAGGCTTTCTATCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGGATGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCATCGAGTTGGGAGTTGTTCGGGTGTGAAAATGGATTCTCTATTTCCAAAAGCTTTGGAGTCTGCAGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCGGCCCTAGTGACCAAGCAAGGTGAAATTTTCTCGTGGGGGGAGGAATCAGGTGGCAGACTTGGGCATGGTGTTGACTCTGATGTGCTCCATCCAAAGCTTATTGATGCTCTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTAATGGTGCATACAATTATGGCCTTCTTGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGTCCCTTGGAAGGCATACATGTTTCATATATTTCCTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGAACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCGTGTGGTGTTTGGCACACAGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTCCCTACCTGTGTTGCGCTCATTGAACACAATTTTTGCCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCTGATGGGAAGCTACCAATTCGTGTTGAAGGGAAATTGTCAAAAAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCACGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTAGTAGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCTGGTATTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCGAACAAACCTTATCGTGTCTGTGATAATTGTTTTAACAAACTTAGGAAAGCAGTAGAAACTGATTCTTCGTCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATAATGGGTCTCTGGAGTTAATTGATAAGGATGACAAATTAGATTCTAGATCTCGAAATCAGCTTGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTCAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCGATATCTAGACGACCTAGTCCACCTCGTTCAACTACACCGACCCCAACGCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGCTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGACCTGCTAGGAGTGTGAAATCACCGTCTCTTGCTTCTTCTTTTGGTTCTAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAGCATTAAGTCCAGAGGCAGAATTAACTGCATCAAACAACCAGTTACTTTCAAATGGATCAGGCACTGTTAGTAACCGAAGTGCAGGTCACAATAAAATGAGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCTCATGATTGACAAGTCTTCTGTCGGTGTTGGGAGTGAGGACCTGGCTCATTGA | 3300 | 0.4361 | MEGFGTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKAFYPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCSGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGIDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAVETDSSSHSSVSRRGSVNNGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGPARSVKSPSLASSFGSNPCSNDVNYASIDRLNIQALSPEAELTASNNQLLSNGSGTVSNRSAGHNKMSQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVLMIDKSSVGVGSEDLAH | 1099 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium2719g00007 | 1099 | SUPERFAMILY | PH domain-like | 12 | 120 | - | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 825 | 856 | - | - | |
| Vium2719g00007 | 1099 | CDD | FYVE_like_SF | 656 | 709 | - | - | |
| Vium2719g00007 | 1099 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 466 | 476 | IPR000408 | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 127 | 183 | - | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 259 | 320 | IPR000408 | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 428 | 479 | IPR000408 | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 983 | 1013 | - | - | |
| Vium2719g00007 | 1099 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 307 | 317 | IPR000408 | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 321 | 372 | IPR000408 | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | BRX domain profile. | 1026 | 1081 | IPR013591 | - | |
| Vium2719g00007 | 1099 | Gene3D | - | 12 | 129 | IPR011993 | - | |
| Vium2719g00007 | 1099 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 482 | 652 | - | - | |
| Vium2719g00007 | 1099 | Pfam | FYVE zinc finger | 647 | 713 | IPR000306 | GO:0046872 | |
| Vium2719g00007 | 1099 | Gene3D | - | 209 | 382 | IPR009091 | - | |
| Vium2719g00007 | 1099 | Gene3D | - | 383 | 486 | IPR009091 | - | |
| Vium2719g00007 | 1099 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 414 | 424 | IPR000408 | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 780 | 794 | - | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 651 | 713 | IPR017455 | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 492 | 542 | IPR000408 | - | |
| Vium2719g00007 | 1099 | SUPERFAMILY | RCC1/BLIP-II | 258 | 648 | IPR009091 | - | |
| Vium2719g00007 | 1099 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 56 | 932 | - | - | |
| Vium2719g00007 | 1099 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 653 | 721 | - | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 373 | 427 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 659 | 720 | IPR013083 | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 543 | 594 | IPR000408 | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 1014 | 1028 | - | - | |
| Vium2719g00007 | 1099 | Pfam | Pleckstrin homology domain | 14 | 120 | IPR001849 | - | |
| Vium2719g00007 | 1099 | CDD | PH_PLC_plant-like | 11 | 121 | - | - | |
| Vium2719g00007 | 1099 | SMART | fyve_4 | 645 | 714 | IPR000306 | GO:0046872 | |
| Vium2719g00007 | 1099 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1025 | 1080 | IPR013591 | - | |
| Vium2719g00007 | 1099 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 595 | 646 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Pfam | Transcription factor BRX N-terminal domain | 908 | 941 | IPR027988 | - | |
| Vium2719g00007 | 1099 | SUPERFAMILY | FYVE/PHD zinc finger | 647 | 718 | IPR011011 | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 983 | 1028 | - | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 135 | 163 | - | - | |
| Vium2719g00007 | 1099 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 230 | 481 | - | - | |
| Vium2719g00007 | 1099 | Pfam | Unstructured region between BRX_N and BRX domain | 950 | 1019 | - | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 590 | 611 | IPR000408 | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 323 | 339 | IPR000408 | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 373 | 389 | IPR000408 | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 414 | 430 | IPR000408 | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 304 | 317 | IPR000408 | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 532 | 550 | IPR000408 | - | |
| Vium2719g00007 | 1099 | PRINTS | Chromosome condensation regulator RCC1 signature | 430 | 444 | IPR000408 | - | |
| Vium2719g00007 | 1099 | MobiDBLite | consensus disorder prediction | 771 | 794 | - | - | |
| Vium2719g00007 | 1099 | Coils | Coil | 857 | 933 | - | - | |
| Vium2719g00007 | 1099 | Gene3D | - | 488 | 658 | IPR009091 | - | |
| Vium2719g00007 | 1099 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 372 | 424 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 542 | 591 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 596 | 643 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 491 | 539 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 428 | 476 | IPR000408 | - | |
| Vium2719g00007 | 1099 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 321 | 369 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium2719g00007 | Vium-Chr2719 | 54442 | 62649 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium2719g00007 | 917 | 1090 | Major Intrinsic Protein MIP | AT1G31880 | 32.778 | 2.52e-15 | 77.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium2719g00007 | - | - | gmx:100802464 | 2004.95 |