Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2719g00004 ATGTCGCGGACTGGTAGAATGGCTTCGGATCTTAGCAGAACCGGTCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGGGGAAAACCCAAGTTTTGCCCCTTTCGTCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATTTCCCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCATCTGAGGCTAATAGTCCTCGAACCTACACAAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAACGAAAGCCTGAAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATACGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTATATGCCGTCCCTCAAAAGGCTTTCTATCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGGATGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCATCGAGTTGGGAGTTGTTCGGGTGTGAAAATGGATTCTCTATTTCCAAAAGCTTTGGAGTCTGCAGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCGGCCCTAGTGACCAAGCAAGGTGAAATTTTCTCGTGGGGGGAGGAATCAGGTGGCAGACTTGGGCATGGTGTTGACTCTGATGTGCTCCATCCAAAGCTTATTGATGCTCTAAGCAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTAATGGTGCATACAATTATGGCCTTCTTGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGTCCCTTGGAAGGCATACATGTTTCATATATTTCCTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGAACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAATCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCGTGTGGTGTTTGGCACACAGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTCCCTACCTGTGTTGCGCTCATTGAACACAATTTTTGCCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCTGATGGGAAGCTACCAATTCGTGTTGAAGGGAAATTGTCAAAAAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCACGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTAGTAGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCTGGTATTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCGAACAAACCTTATCGTGTCTGTGATAATTGTTTTAACAAACTTAGGAAAGCAGTAGAAACTGATTCTTCGTCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATAATGGGTCTCTGGAGTTAATTGATAAGGATGACAAATTAGATTCTAGATCTCGAAATCAGCTTGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTCAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCGATATCTAGACGACCTAGTCCACCTCGTTCAACTACACCGACCCCAACGCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGCTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGGACCTGCTAGGAGTGTGAAATCACCGTCTCTTGCTTCTTCTTTTGGTTCTAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAGCATTAAGTCCAGAGGCAGAATTAACTGCATCAAACAACCAGTTACTTTCAAATGGATCAGGCACTGTTAGTAACCGAAGTGCAGGTCACAATAAAATGAGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCTCATGATTGACAAGTCTTCTGTCGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3324 0.4365 MSRTGRMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKAFYPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCSGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGAYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEHNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGIDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAVETDSSSHSSVSRRGSVNNGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGPARSVKSPSLASSFGSNPCSNDVNYASIDRLNIQALSPEAELTASNNQLLSNGSGTVSNRSAGHNKMSQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVLMIDKSSVGVGSEDLAH 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2719g00004 1107 SMART fyve_4 653 722 IPR000306 GO:0046872
Vium2719g00004 1107 Pfam Transcription factor BRX N-terminal domain 916 949 IPR027988 -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 833 864 - -
Vium2719g00004 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Vium2719g00004 1107 Gene3D - 20 137 IPR011993 -
Vium2719g00004 1107 SUPERFAMILY PH domain-like 20 128 - -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 135 191 - -
Vium2719g00004 1107 CDD FYVE_like_SF 664 717 - -
Vium2719g00004 1107 SUPERFAMILY FYVE/PHD zinc finger 655 726 IPR011011 -
Vium2719g00004 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 499 547 IPR000408 -
Vium2719g00004 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Vium2719g00004 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 550 599 IPR000408 -
Vium2719g00004 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 604 651 IPR000408 -
Vium2719g00004 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Vium2719g00004 1107 Pfam Regulator of chromosome condensation (RCC1) repeat 380 432 IPR000408 -
Vium2719g00004 1107 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 991 1021 - -
Vium2719g00004 1107 SUPERFAMILY RCC1/BLIP-II 266 656 IPR009091 -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 602 IPR000408 -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 328 IPR000408 -
Vium2719g00004 1107 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 733 IPR013083 -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 603 654 IPR000408 -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 788 802 - -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Vium2719g00004 1107 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Vium2719g00004 1107 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Vium2719g00004 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 238 489 - -
Vium2719g00004 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 540 558 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 598 619 IPR000408 -
Vium2719g00004 1107 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 1022 1036 - -
Vium2719g00004 1107 CDD PH_PLC_plant-like 19 129 - -
Vium2719g00004 1107 Gene3D - 391 569 IPR009091 -
Vium2719g00004 1107 Gene3D - 218 390 IPR009091 -
Vium2719g00004 1107 Gene3D - 570 661 IPR009091 -
Vium2719g00004 1107 Pfam FYVE zinc finger 655 721 IPR000306 GO:0046872
Vium2719g00004 1107 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 659 721 IPR017455 -
Vium2719g00004 1107 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 474 484 IPR000408 -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 991 1036 - -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 500 550 IPR000408 -
Vium2719g00004 1107 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 940 - -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 143 171 - -
Vium2719g00004 1107 FunFam Putative E3 ubiquitin-protein ligase HERC1 661 729 - -
Vium2719g00004 1107 FunFam PH, RCC1 and FYVE domains-containing protein 1 490 660 - -
Vium2719g00004 1107 MobiDBLite consensus disorder prediction 779 802 - -
Vium2719g00004 1107 Coils Coil 865 941 - -
Vium2719g00004 1107 Pfam Unstructured region between BRX_N and BRX domain 958 1027 - -
Vium2719g00004 1107 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2719g00004 Vium-Chr2719 54353 62649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2719g00004 925 1098 Major Intrinsic Protein MIP AT1G31880 32.778 2.01e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2719g00004 - - gmx:100802464 2013.42