Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2719g00002 ATGAAAGAATCAAGTAAACTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAGCTGAAAACACAATCCCAACTTTCTGCCTTGGAGACATTTTATGATGAGCACAAGTACCCCACAGAGGAAATGAAAGTAGAACTTGCTGAGAAGTTACGATTGACAGAAAAGCAAATATCTGGGTGGTTTTGTCACAGAAGGTTAAAGGATAAAAGATTGATGAAAGACGAAGCCGTCGCTAATGGACGGCAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGCCAAGATTCTTGTGGAAGCAGTAAACATGCCGATTACAGGTATCTGGATGCTAAGGAGGTTGAGAGCCACGACTTCTACAACAACGAAATATCTGTTGCAGACATGACACACAGACGTATGAACCATTATCCTGAAAATGTTAGTGTAGTGGATGACACATCATCTGAGAGCAGCTCCTTTTTGCAAGAAAGGGCTTTTGCTCAAGGTCAGGATCCATATGATATGGAGCCTTCTAGACATCTTACACCTAACGGAGCTCTACCACCCCTGAATCCCAAAGGTGCAGTTAACCTGGGATACAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCAGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTACGAGGAAGATGGTCCACTACTTGGTATAGAATTTGATCTGCTTCCTCCAGGGGCCTTTGAGTGTCAAACTGAAGATCCAGCTAATGAACCATTTTGTGTAGCGAATCCTCCGCTTCTGAATTCTCCAGAAATCTCTGCTGCAAAAAAACACAATCTTAGCTCTAGATATGATTCGCATTATACTAAATTTAATTCCCAAGATTTGCATATGGAACGAGCTGACTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAGAAAGCCCGTCAGAATATAAAACAAAGGCAACCTTACTACGGTTATACCAATCATGTTTCTGGAAGGAACCCTTTCCCAGATTTGTATGAAGATTCTACTGGAGAAGCATCTGGCTATAACAGTGCTAAGAATCATAGAATGAGCACTAAGCACGGGGTTGAGGGGATGCGATCTGATTCTGCTTCTAACCACAGTGATCACTTTGAGGAGAAGCTTGCGGTTAAGACGAAAGACTTGATGCTGCACGGTTATGATAAGATCAATCCAAAAAGAATACAAAAGAGTGGACATGTTAAATCTAAACCTTCTAGTTCAATCCGTAATTCCCGTGTTCCCATAGATACTGAAGAAAGGGGATTATCTGCTAGGATGGCAAAGGAAGAGATGTTTAAGGTGGACAAGAAAGCAAAAAATACATACCGCGATGTAGATGGAGCAGGGAGTCTTTCAAATGAAATTCTGGTTGCAAAGAGAGCTAAAGTTGACATGCTTCAACAATACCATGTGAAACCATCACCTGTTGCTGAGATGGAGAAAAGGAAAATTCACAGATCTGCTGCAGAGATGCCTTCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCACTAGATTATTAA 1581 0.4118 MKESSKLQSEENKVSNEKNKKRKLKTQSQLSALETFYDEHKYPTEEMKVELAEKLRLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDAKEVESHDFYNNEISVADMTHRRMNHYPENVSVVDDTSSESSSFLQERAFAQGQDPYDMEPSRHLTPNGALPPLNPKGAVNLGYKPSGYLKVKGEIEHAAITAVKKQLGRHYEEDGPLLGIEFDLLPPGAFECQTEDPANEPFCVANPPLLNSPEISAAKKHNLSSRYDSHYTKFNSQDLHMERADFGSLHESDFQDKQDKKARQNIKQRQPYYGYTNHVSGRNPFPDLYEDSTGEASGYNSAKNHRMSTKHGVEGMRSDSASNHSDHFEEKLAVKTKDLMLHGYDKINPKRIQKSGHVKSKPSSSIRNSRVPIDTEERGLSARMAKEEMFKVDKKAKNTYRDVDGAGSLSNEILVAKRAKVDMLQQYHVKPSPVAEMEKRKIHRSAAEMPSSFSEDETAETSSSLDY 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2719g00002 526 MobiDBLite consensus disorder prediction 308 325 - -
Vium2719g00002 526 MobiDBLite consensus disorder prediction 88 106 - -
Vium2719g00002 526 MobiDBLite consensus disorder prediction 81 107 - -
Vium2719g00002 526 MobiDBLite consensus disorder prediction 494 526 - -
Vium2719g00002 526 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Vium2719g00002 526 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Vium2719g00002 526 MobiDBLite consensus disorder prediction 308 339 - -
Vium2719g00002 526 SMART HOX_1 18 80 IPR001356 GO:0003677
Vium2719g00002 526 MobiDBLite consensus disorder prediction 1 24 - -
Vium2719g00002 526 MobiDBLite consensus disorder prediction 1 26 - -
Vium2719g00002 526 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vium2719g00002 526 Coils Coil 7 27 - -
Vium2719g00002 526 MobiDBLite consensus disorder prediction 510 526 - -
Vium2719g00002 526 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Vium2719g00002 526 CDD homeodomain 20 75 IPR001356 GO:0003677
Vium2719g00002 526 Gene3D - 8 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2719g00002 Vium-Chr2719 24235 29373 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2719g00002 3 525 Homeobox Transcription Factor Family AT4G03250 39.114 3.89e-81 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vium2719g00002 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2719g00002 - - gmx:100803515 877.47