Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2715g00007 ATGATGGTTGTTGATCTTTTATCTTCTGGTTCTGCTGGAACTGCCATTTCTCAAACTGTAGAGATCATTGCTGAGTTCGTAGTTAATGCTAAAAATGTTCTTGTGAAAAAGGATAGTTTTAATGAACTTGGTGCTTACATGGAAAGAATTAAGCCTGTCTTGGAAGAGTTGAAGAAAGGAAAAGTCAGTGATTCTGAGTCATTCAACAAAGCCATTGAGACCATGAACAAAGAAATTAAAGATGCAAAGGTACTAGCAGAAGAGTGCAGCAAGAAGAGCAAGGTTTATCTACTAATGAACTGCAGGTCCATTGCTAAGAAGATAGAGGATCACACAAAACAGCTGAGTTGGGCACTTAGTCTTCTTCCTTTAGCCACAACAGGTCTTTCTTCAGGAATAGTTGAAGATATTGAAAAGCTATGTGACAGCATGCAGACATCTGGATTTAAAGAAGCTCTAGATGAAGAAGCGATTTTAGATAAAATTGACTCAGTGATTAGGGAAAACAATGTTGATCGTTCCCATGCAAACAAAATGCTACTTCTCATAGCTGAAGCTGTTGGCATTAGGAATGAGAATTCAACAATAAAGTCGGAACTTGAAGAGTTTAAGAGTGAAATTGAAAAGGCCCGGGATAGGAAGGAGTTAGCTGAAGCTGTGCAGATGGATCAAATCATTGCTTTGTTGGAAAGGGCCGATGCAGCTTCATCCCCTAGGGAAAAGGAACGCAGATACTTTGCGAAACGCCAATCTTTGGGTAGTCAAATATTGGAGCCTTTGCAGTCATTTTATTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTTGAAATTTCATCTGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGAAGGAAATAAATTGTGCCCCTTGACCTTGATTCCCCTGGACACATCAGTTTTGAGACCTAACAAAATGTTGAAACGATCCATACAAGAGTGGAAGGACAGAAATACAATGATTACAATTGCTACATTGAAAGAAAAAATCCTGTCTGGAAATGATGTGGAAGTGCTGCATGATCTGCAGATTGTTCAGAATTTGTGTGAAGAAAAAGAACAACACAGGGAATGGGTCATTCTGGAGGGTTACATCCTAACTCTCATTCAAACTATATCAAGAAACCGTGATATAAGAAGACATTCTCTTTCCATCCTTGGCATGCTGGCAAAGGATAGTGAAGAAGCTAAGGTAAAAATTTCAACCGTAGATGGTGCAATTGAATCAATTGTTCGGTCTCTTGGACGTAATATAGTGGAAAGGAAGTTAGCAGTAGCTTTGCTGCTTGAACTGTCCAAATATGATTTGGCACTAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTTACTATGTCTAGTGGAGATGACAATCAAGCTGCTAGAGATGCAACGGAGTTATTGGAGAATCTGTCATACTCTGATCAGAATGTTATTCAGATGACAAAAGTAAATTACTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGAAGATGTAAAGATGATTATGGCCAAAACTTTAGCAGAAATGGAGTTAAATGACCATAATAGAGAGTCCTTGTTTGATGGTGGTGTACTGGTTCCTCTTCTAGAAATGTTCTCACACAATGATCTTAAGGTGAAAACAGTTGCTATCAAAGCTCTTAAGAATTTATCTAATTCAAAGAAAAATGGACAGGAAATGATAAGACTGGGGGCTGCACGGCCACTACTTAACCTTCTTTTCAACCAAAGCATATACACTGCAAGTTTGTGGGAAGATCTAACAACCATAATCGTGCAACTTGCTACATCAACTATCTCGCAGGACTCTCAAACACCTGTTTTATTGCTAGATTCTGATGATGATGTTTTCAATCTCTTCAATTTAGTTAATGTCACAGAGCCTGTTGTGCAACAGAACATTATCCAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCATCGTGTATCAGAACCAAACTGAAAGAGTACCCAGCTGTTCCAAAATTGGTTCAACTGTGCGAGAATGAAAACCAAAACCTACGAGCAAGTGCTGTAAAGTTGTTTTCTTGCTTGGTGGAGAATTGTGATGAAGCCATCATACAGGAGAGCGTGAACCAGAGATGCATCAATACACTACTCCGGATCATAAAATCTTCATCTGATGATGAGGAAAAACTTTCTGCCATGGGAATTATATGCTATCTTCCAGAAACTGACCAGATAACTAGATGGCTTCTGGATGCTGGGGCACTGGAAATCATTAAAAGTTGTGTCCAAGATGGGAAAGACAGGGATCATCAAAGGAGAACTTTAGTTGAGAATGCCATTGGTGCCCTTTGTCGTTTTACTGTTCCAACAAACTTGGAATGGCAAAAAAGTGCAGCTGAAACAGGAATCATAACTGTTTTGGTGCAACTGCTTGAAAATGGAACCACCTTGACAAAACAACGCGTGGCGCAGTGTCTTGCTCAATTTTCTAGAAGCTCATTTCTGCTAAGCAGGCCAATACCAAAGCGCAGAGGACTATGGTGTTTCTCAGCTCATGCTGATATTGGCTGCATGGTTCATGGTGGAATATGCTCAGTCAAATCATCATTTTGTCTCTTGGAGGCCAATGCAGTGGGACCACTCACAATAACTCTTGAGGAATCTGATCCTGGAGTTTGTGAAGCTTCTTTGGATGCCCTTTTAACGTTGATAGAAGGTGAAAGACTGCAGCATGGTAGTAAAGTGCTTGCAGATGCAAATGCCATACCACTCATAATCAAATATCTTGGTTCACACTCCCCTGGCTTGCTAGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTCCGGCTGGTCGAATTCAAACAGAAGTATGGAGCCTCAGCTCAAATGCCTCTGGTTGATTTGACTCAGAGAGGTAATGGTACTGTTAGATCCATGTCAGCTAGAATATTGGCACAGTTGAACGTACTTCATGATCAATCTTCATACTTCTAA 3012 0.4037 MMVVDLLSSGSAGTAISQTVEIIAEFVVNAKNVLVKKDSFNELGAYMERIKPVLEELKKGKVSDSESFNKAIETMNKEIKDAKVLAEECSKKSKVYLLMNCRSIAKKIEDHTKQLSWALSLLPLATTGLSSGIVEDIEKLCDSMQTSGFKEALDEEAILDKIDSVIRENNVDRSHANKMLLLIAEAVGIRNENSTIKSELEEFKSEIEKARDRKELAEAVQMDQIIALLERADAASSPREKERRYFAKRQSLGSQILEPLQSFYCPITQDVMVDPVEISSGQTFERSAIEKWFAEGNKLCPLTLIPLDTSVLRPNKMLKRSIQEWKDRNTMITIATLKEKILSGNDVEVLHDLQIVQNLCEEKEQHREWVILEGYILTLIQTISRNRDIRRHSLSILGMLAKDSEEAKVKISTVDGAIESIVRSLGRNIVERKLAVALLLELSKYDLALEHIGKVQGCILLLVTMSSGDDNQAARDATELLENLSYSDQNVIQMTKVNYFKHLLQRLSTGPEDVKMIMAKTLAEMELNDHNRESLFDGGVLVPLLEMFSHNDLKVKTVAIKALKNLSNSKKNGQEMIRLGAARPLLNLLFNQSIYTASLWEDLTTIIVQLATSTISQDSQTPVLLLDSDDDVFNLFNLVNVTEPVVQQNIIQTFYALCQTPSASCIRTKLKEYPAVPKLVQLCENENQNLRASAVKLFSCLVENCDEAIIQESVNQRCINTLLRIIKSSSDDEEKLSAMGIICYLPETDQITRWLLDAGALEIIKSCVQDGKDRDHQRRTLVENAIGALCRFTVPTNLEWQKSAAETGIITVLVQLLENGTTLTKQRVAQCLAQFSRSSFLLSRPIPKRRGLWCFSAHADIGCMVHGGICSVKSSFCLLEANAVGPLTITLEESDPGVCEASLDALLTLIEGERLQHGSKVLADANAIPLIIKYLGSHSPGLLEKSLNALERIFRLVEFKQKYGASAQMPLVDLTQRGNGTVRSMSARILAQLNVLHDQSSYF 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2715g00007 1003 Coils Coil 193 220 - -
Vium2715g00007 1003 Gene3D - 430 619 IPR011989 -
Vium2715g00007 1003 CDD MLKL_NTD 15 127 - -
Vium2715g00007 1003 CDD RING-Ubox_PUB 263 312 IPR045210 -
Vium2715g00007 1003 Gene3D - 868 1001 IPR011989 -
Vium2715g00007 1003 Coils Coil 72 92 - -
Vium2715g00007 1003 Gene3D - 14 126 IPR036537 GO:0007166
Vium2715g00007 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 329 IPR013083 -
Vium2715g00007 1003 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 12 117 IPR008808 -
Vium2715g00007 1003 Gene3D - 330 429 IPR011989 -
Vium2715g00007 1003 SUPERFAMILY RING/U-box 248 331 - -
Vium2715g00007 1003 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Vium2715g00007 1003 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1003 - -
Vium2715g00007 1003 SUPERFAMILY ARM repeat 342 993 IPR016024 -
Vium2715g00007 1003 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Vium2715g00007 1003 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Vium2715g00007 1003 SMART arm_5 569 620 IPR000225 GO:0005515
Vium2715g00007 1003 SMART arm_5 915 955 IPR000225 GO:0005515
Vium2715g00007 1003 SMART arm_5 528 568 IPR000225 GO:0005515
Vium2715g00007 1003 SMART arm_5 445 486 IPR000225 GO:0005515
Vium2715g00007 1003 SMART arm_5 748 794 IPR000225 GO:0005515
Vium2715g00007 1003 SMART arm_5 363 402 IPR000225 GO:0005515
Vium2715g00007 1003 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Vium2715g00007 1003 ProSiteProfiles RPW8 domain profile. 1 156 IPR008808 -
Vium2715g00007 1003 Gene3D - 630 844 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2715g00007 Vium-Chr2715 26427 40639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2715g00007 250 1003 U-box Gene Family AT1G76390 28.272 1.88e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2715g00007 - - gmx:100799969 1617.05